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AbsCN-seq | A statistical method to estimate tumor purity, ploidy and absolute copy numbers from NGS data

A simple and robust algorithm to infer purity, ploidy and absolute copy numbers in whole numbers for tumor cells from sequencing data. A simulation study shows that estimates have reasonable accuracy, and that the algorithm is robust against the presence of segmentation errors and subclonal populations.

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AbsCN-seq forum

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AbsCN-seq classification

AbsCN-seq specifications

Unique identifier:
OMICS_02202
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Stability:
Stable

AbsCN-seq distribution

versioning

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No versioning.

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AbsCN-seq support

Maintainer

  • Karen Messer <>

Credits

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Publications

Institution(s)

Division of Biostatistics, Moores Cancer Center, University of California-San Diego, La Jolla, CA, USA

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