AbsIDconvert statistics

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AbsIDconvert specifications

Information


Unique identifier OMICS_09715
Name AbsIDconvert
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Eric C. Rouchka <>

Information


Unique identifier OMICS_09715
Name AbsIDconvert
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Eric C. Rouchka <>

Publication for AbsIDconvert

AbsIDconvert in publications

 (2)
PMCID: 3734162
PMID: 23855655
DOI: 10.1186/1471-2105-14-223

[…] id mapping study. in fact, the set of id pairs do not need to consist of the same id types, as long as they map features from the same pair of platforms. for example, a promising alternative is absidconvert [], which converts between id domains by intermediate passage through mapping to a tree of genomic intervals, providing two-step indirect mappings and flexible, dynamic redefinition […]

PMCID: 3409059
PMID: 22873757
DOI: 10.1186/1471-2105-13-S12-A1

[…] and alternative intron-exon boundaries []. eric rouchka followed with a talk “systems level approach to understanding intercellular interactions” that discussed two recently developed approaches, absidconvert [http://bioinformatics.louisville.edu/abid/] and a bioconductor package categorycompare [http://www.bioconductor.org/packages/release/bioc/html/categorycompare.html]. in addition, […]


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AbsIDconvert institution(s)
Department of Computer Engineering and Computer Science, University of Louisville, Louisville, KY, USA; Department of Anatomical Sciences & Neurobiology, School of Medicine, University of Louisville, Louisville, KY, USA; Kentucky Spinal Cord Injury Research Center, Department of Neurological Surgery, University of Louisville, Louisville, KY, USA; Department of Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA
AbsIDconvert funding source(s)
This work was partially funded by National Institute of Health (NIH) grants P20RR016481, 3P20RR016481-09S1, 8P20GM103436-12 and a Department of Energy (DOE) contract DE-EM0000197. Partial support was also provided by the Paralyzed Veterans of America and by the Kentucky Spinal Cord and Head Injury Research Trust.

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