AbSim statistics

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Citations per year

Number of citations per year for the bioinformatics software tool AbSim

Tool usage distribution map

This map represents all the scientific publications referring to AbSim per scientific context
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AbSim specifications


Unique identifier OMICS_20795
Name AbSim
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 0.2.6
Stability Stable
rmarkdown, knitr, R(≥3.1.0), ape, poweRlaw
Maintained Yes


No version available



  • person_outline Alexander Yermanos

Publication for AbSim

AbSim citations


Intelligibility Evaluation of Pathological Speech through Multigranularity Feature Extraction and Optimization

PMCID: 5282458
PMID: 28194222
DOI: 10.1155/2017/2431573

[…] d by sample data r 1, r 2,…, r i,…, r M, M polygon (r i, r i+1,…, r i+m−1) is composed of arbitrary continuous adjacent m-dimensional variables, and the center of M polygon by geometric algebra is(13)absim=∑j=1mri+j−1cos⁡j−1∗w32+∑j=2mri+j−1sin⁡j−1∗w32,angleim=arctan⁡∑j=2mri+j−1sin⁡j−1∗w/32∑j=1mri+j−1cos⁡j−1∗w/32+2πi−1M,where w = 2π/M is the angle of the adjacent features, absim is the amplitude of […]


Interplay between α , β , and γ Secretases Determines Biphasic Amyloid β Protein Level in the Presence of a γ Secretase Inhibitor

PMCID: 3543028
PMID: 23152503
DOI: 10.1074/jbc.M112.419135

[…] ions in the absence of GSI, with other species set to zero. The model was integrated for the same period of time spanned by experimental or clinical observations.The objective function used is where Aβsim0 is the simulation in the absence of compound, Aβsimi is the amount of Aβ produced after adding compound at concentration Xi, Aβobsi is the corresponding experimentally observed amount relative […]

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AbSim institution(s)
Department of Biosystems Science and Engineering, ETH Zürich, Basel, Switzerland; Institute of Microbiology, ETH Zürich, Zürich, Switzerland; Department of Chemistry and Applied Biosciences, ETH Zürich, Zürich, Switzerland
AbSim funding source(s)
Supported by SystemsX.ch AntibodyX RTD project, Swiss National Science Foundation (Project no: 31003A_143869, 31003A_170110), and Swiss Vaccine Research Institute.

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