ABWGAT statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ABWGAT

Tool usage distribution map

This map represents all the scientific publications referring to ABWGAT per scientific context
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ABWGAT specifications


Unique identifier OMICS_22164
Alternative name Anchor-Based Whole Genome Analysis Tool
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Output data A list of variations such as SNVs, indels, repeat expansion and inversion.
Operating system Unix/Linux
Programming languages C++, Perl
Computer skills Advanced
Stability No
Maintained No


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Publication for Anchor-Based Whole Genome Analysis Tool

ABWGAT citation


Identification of Hot and Cold spots in genome of Mycobacterium tuberculosis using Shewhart Control Charts

Sci Rep
PMCID: 3291883
PMID: 22389766
DOI: 10.1038/srep00297

[…] hot and cold spots as regions of genomes (windows of 2000 nucleotides) that either display higher or lower than expected number of SNVs respectively in a population of isolates/strains. We have used ABWGAT (Anchor Based Whole Genome Analysis Tool) to carry out pair wise comparison of fully sequenced M. tuberculosis genomes in order to identify SNVs. The distribution of SNVs identified by comparin […]

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ABWGAT institution(s)
Center for Computational Biology and Bioinformatics, School of Information Technology, New Delhi, India; School of Life Sciences, Jawaharlal Nehru University, New Delhi, India
ABWGAT funding source(s)
Supported by Department of Biotechnology (Government of India); COE (DBT).

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