ABWGAT specifications

Information


Unique identifier OMICS_22164
Name ABWGAT
Alternative name Anchor-Based Whole Genome Analysis Tool
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Output data A list of variations such as SNVs, indels, repeat expansion and inversion.
Operating system Unix/Linux
Programming languages C++, Perl
Computer skills Advanced
Stability No
Maintained No

Versioning


Add your version

Maintainers


This tool is not available anymore.

Publication for Anchor-Based Whole Genome Analysis Tool

ABWGAT in publication

PMCID: 3291883
PMID: 22389766
DOI: 10.1038/srep00297

[…] hot and cold spots as regions of genomes (windows of 2000 nucleotides) that either display higher or lower than expected number of snvs respectively in a population of isolates/strains. we have used abwgat (anchor based whole genome analysis tool) to carry out pair wise comparison of fully sequenced m. tuberculosis genomes in order to identify snvs. the distribution of snvs identified […]


To access a full list of publications, you will need to upgrade to our premium service.

ABWGAT institution(s)
Center for Computational Biology and Bioinformatics, School of Information Technology, New Delhi, India; School of Life Sciences, Jawaharlal Nehru University, New Delhi, India
ABWGAT funding source(s)
Supported by Department of Biotechnology (Government of India); COE (DBT).

ABWGAT reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review ABWGAT