Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 12
Release date: Aug 13 2016
Last update date: Nov 26 2018
Access: Public
Diseases: Neoplasms, Tumor Lysis Syndrome, Precursor T-Cell Lymphoblastic Leukemia-Lymphoma
Chemicals: Potassium
Computational protocol: TopHat, Cufflinks
Dataset link Ionic immune suppression within the tumour microenvironment limits T cell effector function

Experimental Protocol


RNA expression was measured by RNA-Seq on day 5 of cultures, maintained in individual biologial triplicates which were stimulated with immobilized anti-CD3/28 antibodies or kept in complete media (no stim) - with equivalent conditions treated with isotonic media containing elevated potassium.

Repositories


GEO

GSE84996

ArrayExpress

E-GEOD-84996

ENA

SRP080338

BioProject

PRJNA335843

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Contact


Suman Kumar Vodnala

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