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acc-MOTIF specifications

Information


Unique identifier OMICS_05020
Name acc-MOTIF
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for acc-MOTIF

acc-MOTIF citations

 (4)
library_books

miRNA independent hepacivirus variants suggest a strong evolutionary pressure to maintain miR 122 dependence

2017
PLoS Pathog
PMCID: 5679655
PMID: 29084265
DOI: 10.1371/journal.ppat.1006694

[…] xed structure (). Although it is tempting to speculate that this more relaxed RNA structure might facilitate miR-122 access to the miRBR region, e.g. by providing access to auxiliary pairing with the ACC motif at nt 87–89, the C83A mutation also facilitated more efficient infection kinetics in the absence of miR-122 (), indicating that mechanisms beyond miR-122 engagement may be at play. HCV, HCVG […]

library_books

Helicobacter pylori strains from a Nigerian cohort show divergent antibiotic resistance rates and a uniform pathogenicity profile

2017
PLoS One
PMCID: 5413034
PMID: 28463973
DOI: 10.1371/journal.pone.0176454

[…] A-C motifs correlate with stronger pathology in the patient []. Nine of the 14 isolates sequenced here contained an ABC motif arrangement, the other five harbored either an AC motif (three cases), an ACC motif (one case) or an ABCC motif (one case). Conspicuously, a conserved KDKGPE motif was found upstream of the EPIYA-A motif in nine out of 14 sequences, however no correlation with pathology cou […]

library_books

DNA Methylation Assessed by SMRT Sequencing Is Linked to Mutations in Neisseria meningitidis Isolates

2015
PLoS One
PMCID: 4676702
PMID: 26656597
DOI: 10.1371/journal.pone.0144612

[…] target motifs, these control sequence motifs displayed no significant deviation, if compared to motif counts at random loci as described above.We have extracted 120 ORFs displaying at least one AC6m ACC motif within the interval from -75bp to their start position, but the current annotations of the large majority of those genes (hypothetical protein, unknown function) did not allow to identify pa […]

library_books

Discovery of rare mutations in extensively pooled DNA samples using multiple target enrichment

2014
Plant Biotechnol J
PMCID: 4265296
PMID: 24602056
DOI: 10.1111/pbi.12174

[…] The DNA sequence context generally has certain influences on sequencing error rates. A few error-prone motifs, such as the GGT/ACC motif, that were identified in this study can be excluded in the analysis when it was predicted or identified. However, it is still hard to deal with a base position where the error rate is close […]

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