ACCpro protocols

ACCpro specifications

Information


Unique identifier OMICS_04653
Name ACCpro
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Pierre Baldi <>

Information


Unique identifier OMICS_04653
Name ACCpro
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Pierre Baldi <>

Publication for ACCpro

ACCpro IN pipelines

 (2)
2013
PMCID: 3549838
PMID: 23369338
DOI: 10.1186/1471-2105-14-S2-S6

[…] prediction of secondary structure type and regions of disorder of each mutation site, respectively. for the prediction of relative accessible surface area, we used the recursive neural network-based accpro method [17] in the default configuration with the ncbi non-redundant database and a threshold of 25% for classifying residues as exposed to the solvent., in order to provide a more specific […]

2012
PMCID: 3399485
PMID: 22844194
DOI: 10.4137/EBO.S9743

[…] amino acid residues (psa), proportion of pfam domain sites (pd), and proportion of intrinsically disordered regions (pidr)., solvent-accessible residues were predicted by using the sspro/accpro 4.1 program52 with a 30% exposure threshold. intrinsically disordered regions were predicted by using disopred v253 with default parameters. the pfam domain information54 was retrieved […]

ACCpro institution(s)
Department of Computer Science and Institute for Genomics and Bioinformatics, University of California, Irvine, CA, USA

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