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ACCpro specifications

Information


Unique identifier OMICS_04653
Name ACCpro
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Pierre Baldi <>

Information


Unique identifier OMICS_04653
Name ACCpro
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Pierre Baldi <>

Publications for ACCpro

ACCpro in publications

 (23)
PMCID: 5751690
PMID: 29297299
DOI: 10.1186/s12859-017-1971-7

[…] weighting scheme (spine-x) [], a nearest neighbor method by using sequence profiles (sann) [], an ensemble of bidirectional recursive neural networks using both sequence and structure similarity (accpro5) [], and a conditional neural fields model (acconpred) []. for contact number prediction, we compare our method with kinjo’s method which applied linear regression scheme based on multiple […]

PMCID: 5662722
PMID: 29085020
DOI: 10.1038/s41598-017-14533-3

[…] analysis., relative solvent accessibility (rsa) of a residue was calculated using the program naccess (unpublished, s. hubbard and j. thornton 1992–6, http://www.wolf.bms.umist.ac.uk/naccess/) and accpro. a site was regarded as exposed if its rsa was above 25%., , jiejian luo and lizong deng contributed equally to this work., electronic supplementary material , supplementary information […]

PMCID: 5470696
PMID: 28614374
DOI: 10.1371/journal.pone.0179314

[…] probabilities; 9) solvent accessible surface area, secondary structure and local backbone angles generated by spider2 []; 10) predicted the relative solvent accessibility of protein residues by the accpro and accpro20 from the scratch package []; 11)evolutionary conservation scores calculated based on pssm [] and jensen-shannon divergence [, ]., structural features, including secondary […]

PMCID: 4987638
PMID: 27530967
DOI: 10.1038/srep31571

[…] score is also used as a feature. for solvent accessibility features, the absolute solvent accessibility of the model is computed by dssp and relative solvent accessibility is computed by accpro5. these two vectors are compared and transformed into a pearson correlation coefficient and a cosine value as two features., the sift is a program that uses averaged (i.e. amino acid […]

PMCID: 4757695
PMID: 26925040
DOI: 10.3389/fmicb.2016.00165

[…] structure prediction and tertiary fold-recognition (fr) were carried out via the genesilico metaserver gateway (). solvent accessibility for the individual residues was predicted with sable (), accpro2 (), and jnet (). disordered residues were predicted from consensus of results generated with disprot (), dispro (), disembl (), ronn (), and disopred () methods. secondary structure […]


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ACCpro institution(s)
Department of Computer Science and Institute for Genomics and Bioinformatics, University of California, Irvine, CA, USA

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