Detects m/z values of biological samples for high-resolution mass spectrometry (MS). AMDORAP allows to address the relationships between biological effects and cellular metabolites based on accurate m/z values. The tool can detect more accurate m/z values from raw data and provide the platform for metabolic fingerprinting. The m/z errors by AMDORAP are smallest, although the number of compared compounds might be not enough. The method should be indispensable as a starting point for comparative liquid chromatography (LC)-orbitrap analysis.

User report

0 user reviews

0 user reviews

No review has been posted.

AMDORAP forum

No open topic.

AMDORAP classification

AMDORAP specifications

Software type:
Package
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Source code URL:
https://sourceforge.net/p/amdorap/code/HEAD/tree/
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Version:
1.0.6

Publications

  • (Takahashi et al., 2011) AMDORAP: non-targeted metabolic profiling based on high-resolution LC-MS. BMC Bioinformatics.
    PMID: 21702951

Credits

Institution(s)

Graduate School of Information Science, Nara Institute of Science and Technology, Takayama, Ikoma, Nara, Japan; Biological Science Laboratories, Kao Corporation, Akabane, Ichikai, Haga, Tochigi, Japan

Funding source(s)

This work has been partly supported by the Japan Science and Technology Agency, CREST (Elucidation of Amino Acid Metabolism in Plants Based on Integrated Omics Analyses).

Related Metabolite identification tools

Most Recent Tools

Desktop app
modified Asymmetric… modified Asymmetric Pseudo-Voigt

mAPV modified Asymmetric Pseudo-Voigt

Incorporates DT-CWT (Dual-Tree Complex Wavelet Transformation) along with SURE…

Incorporates DT-CWT (Dual-Tree Complex Wavelet Transformation) along with SURE for spectra smoothing thus avoiding the overhead of customizing the method for different datasets by setting parameters.…

Desktop app
Expertomica… Expertomica Metabolite Profiling

EMP Expertomica Metabolite Profiling

Uses probalistic methods for the filtration of liquid chromatography–mass…

Uses probalistic methods for the filtration of liquid chromatography–mass spectrometry or gas chromatography-mass spectrometry. EMP evaluates the given instrument, detects compounds and calculates…

mzCloud mzCloud

mzCloud

An extensively curated database of high-resolution tandem mass spectra that are…

An extensively curated database of high-resolution tandem mass spectra that are arranged into spectral trees. mzCloud represents a key conceptual shift towards a modern mass spectral database. This…

Desktop app
RAMClustR RAMClustR

RAMClustR

Clusters non-targeted mass spectrometric metabolomics data. With RAMClustR,…

Clusters non-targeted mass spectrometric metabolomics data. With RAMClustR, feature detection is performed on both MS and idMS/MS (indiscriminant MS/MS) data and feature-feature relationships are…

16 related tools

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.