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Detects m/z values of biological samples for high-resolution mass spectrometry (MS). AMDORAP allows to address the relationships between biological effects and cellular metabolites based on accurate m/z values. The tool can detect more accurate m/z values from raw data and provide the platform for metabolic fingerprinting. The m/z errors by AMDORAP are smallest, although the number of compared compounds might be not enough. The method should be indispensable as a starting point for comparative liquid chromatography (LC)-orbitrap analysis.

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AMDORAP versioning

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AMDORAP classification

AMDORAP specifications

Software type:
Package
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Source code URL:
https://sourceforge.net/p/amdorap/code/HEAD/tree/
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Version:
1.0.6

Credits

Publications

  • (Takahashi et al., 2011) AMDORAP: non-targeted metabolic profiling based on high-resolution LC-MS. BMC Bioinformatics.
    PMID: 21702951

Institution(s)

Graduate School of Information Science, Nara Institute of Science and Technology, Takayama, Ikoma, Nara, Japan; Biological Science Laboratories, Kao Corporation, Akabane, Ichikai, Haga, Tochigi, Japan

Funding source(s)

This work has been partly supported by the Japan Science and Technology Agency, CREST (Elucidation of Amino Acid Metabolism in Plants Based on Integrated Omics Analyses).

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