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ACCUSA specifications


Unique identifier OMICS_01360
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability No
Maintained No



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Publications for ACCUSA

ACCUSA in publications

PMCID: 4270288
PMID: 25317948
DOI: 10.7554/eLife.03229.018

[…] (quality control, adapter removal). more than 90% of all reads could be mapped to the p. pacificus genome ( with bwa (version 0.5.9) for each library. we then employed accusa for snp detection (). briefly, we performed a head-to-head comparison of the mutant ppa-obi-1 and wild-type ps312 mapped libraries. the algorithm represents read stacks (base calls […]

PMCID: 4009776
PMID: 24832230
DOI: 10.3390/biology1020370

[…] well as marker design files illumina goldengate of infinium assay designs., there are many snp discovery tools available. the main difference between our approach and most other snp callers such as accusa [], agsnp [], ngs-snp [] and atlas-snp2 [] is that the sgsautosnp method does not consider the reference for snp discovery. instead, the reference is used to assemble the reads, and snps […]

ACCUSA institution(s)
Bioinformatics in Quantitative Biology, The Berlin Institute for Medical Systems Biology at Max Delbrück Center for Molecular Medicine, Berlin-Buch, Germany
ACCUSA funding source(s)
Supported by Max Planck Institute for Developmental Biology Tübingen and Max-Delbrück-Center for Molecular Medicine Berlin.

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