ACCUSA statistics

You need an account to access this content

info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Variant detection chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

ACCUSA specifications

Information


Unique identifier OMICS_01360
Name ACCUSA
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability No
Maintained No

Download


Versioning


Add your version

Maintainer


This tool is not available anymore.

Publications for ACCUSA

ACCUSA in publications

 (2)
PMCID: 4270288
PMID: 25317948
DOI: 10.7554/eLife.03229.018

[…] (quality control, adapter removal). more than 90% of all reads could be mapped to the p. pacificus genome (www.pristionchus.org) with bwa (version 0.5.9) for each library. we then employed accusa for snp detection (). briefly, we performed a head-to-head comparison of the mutant ppa-obi-1 and wild-type ps312 mapped libraries. the algorithm represents read stacks (base calls […]

PMCID: 4009776
PMID: 24832230
DOI: 10.3390/biology1020370

[…] well as marker design files illumina goldengate of infinium assay designs., there are many snp discovery tools available. the main difference between our approach and most other snp callers such as accusa [], agsnp [], ngs-snp [] and atlas-snp2 [] is that the sgsautosnp method does not consider the reference for snp discovery. instead, the reference is used to assemble the reads, and snps […]

ACCUSA institution(s)
Bioinformatics in Quantitative Biology, The Berlin Institute for Medical Systems Biology at Max Delbrück Center for Molecular Medicine, Berlin-Buch, Germany
ACCUSA funding source(s)
Supported by Max Planck Institute for Developmental Biology Tübingen and Max-Delbrück-Center for Molecular Medicine Berlin.

ACCUSA reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review ACCUSA