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AceView specifications

Information


Unique identifier OMICS_30505
Name AceView
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Danielle Thierry-Mieg

AceView citations

 (82)
library_books

Selection on the regulation of sympathetic nervous activity in humans and chimpanzees

2018
PLoS Genet
PMCID: 5908061
PMID: 29672586
DOI: 10.1371/journal.pgen.1007311

[…] profile of ADRA2C in the brain of human and non-human primates were retrieved from the Illumina Human BodyMap 2.0 and the Non-Human Primates Reference Transcriptome Resource (http://nhprtr.org/) via AceView []. Additionally, RNA-seq data for the brain samples of human, chimpanzee, and rhesus macaque [] were examined. RPKM values for ADRA2C and its orthologues were compared. We also examined H3K27 […]

library_books

Multi omics integration for neuroblastoma clinical endpoint prediction

2018
Biol Direct
PMCID: 5907722
PMID: 29615097
DOI: 10.1186/s13062-018-0207-8

[…] The RNA-Seq data was downloaded from CAMDA2017 website (http://camda2017.bioinf.jku.at/doku.php). The data provided was already preprocessed, normalized and log2 transformed using the Magic-AceView (“MAV”) pipeline, described in detail in []. In particular, we used the data aggregated at the gene level (“MAV-G”). Agilent microarray raw data was background-corrected (“normexp” method) and […]

library_books

Intergenic disease associated regions are abundant in novel transcripts

2017
Genome Biol
PMCID: 5747244
PMID: 29284497
DOI: 10.1186/s13059-017-1363-3

[…] the transcripts, with the sequence overlap confined to a small portion of the capture transcript and with a growing proportion over later GENCODE versions, while the more permissive databases such as AceView and ESTs reported 20–30%, with the highest sequence overlap from MiTranscriptome [, , , ] (Fig. ). Next, we measured the coding potential of the captured transcripts with the Coding-Potential […]

library_books

Alternative Splicing of CIPK3 Results in Distinct Target Selection to Propagate ABA Signaling in Arabidopsis

2017
Front Plant Sci
PMCID: 5705611
PMID: 29225607
DOI: 10.3389/fpls.2017.01924

[…] Earlier it was reported that the CIPK3 locus generates 3 splice variants (). However, current genome annotation on TAIR and ACEVIEW predicted the existence of 15 exons in CIPK3 gene and generation of probable 5 alternate transcripts (CIPK3.1, CIPK3.2, CIPK3.3, CIPK3.4 and CIPK3.5). CIPK3.4 (AT2G26980.4) is the full-length […]

library_books

Protein interaction network of alternatively spliced NudCD1 isoforms

2017
Sci Rep
PMCID: 5636827
PMID: 29021621
DOI: 10.1038/s41598-017-13441-w

[…] l translation start site (see arrow, Fig. ). This results in a smaller isoform with a shorter and different N-terminal (Fig. ). Isoforms 1 and 2 do not include exon 4. Additional variants on NIH-NCBI-AceView includes the 3 isoforms that we report here (a to c in their variants). Isoform 4 (or variant d) is an incomplete mRNA lacking exons in the 3′ and does not contain a 3′UTR, probably from incom […]

library_books

Snaptron: querying splicing patterns across tens of thousands of RNA seq samples

2017
Bioinformatics
PMCID: 5870547
PMID: 28968689
DOI: 10.1093/bioinformatics/btx547

[…] tudy considered the 236 exons to be unannotaed, Snaptron results showed that 132 were annotated, most by the more inclusive SIBgenes (https://genome.ucsc.edu/cgi-bin/hgTrackUi? db=hg38&g=sibGene) and ACEview () tracks. Thus, Snaptron makes it easy to understand the annotation status of splicing events with respect to a wide range of annotations. […]

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AceView institution(s)
National Center for Biotechnology Information, National Library of Medicine, NIH, Bethesda, MD, USA
AceView funding source(s)
Supported by the Intramural Research Program of the NIH, National Library of Medicine.

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