aCGH and SNP microarray data analysis bioinformatics software tools

Array comparative genomic hybridization (aCGH; Pinkel et al., 1998) and single nucleotide polymorphism (SNP) microarray (Mei et al., 2000) are array-based karyotyping techniques which can help determine the genome abnormalities causing genetic disorders and the acquired genome…

aCGH and SNP array analysis steps

aCGH and SNP array analysis workflow

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aCGH and SNP array analysis workflow schema

Most recent bioinformatics tools

WebaCGH
Web

WebaCGH Web Array Comparative Genomic Hybridisation

Allows detection of chromosomal gains and losses in a high-resolution format.…

Allows detection of chromosomal gains and losses in a high-resolution format. WebaCGH performs about oligonucleotide microarrays and cDNA. This tool has three different functions: (1) detect…

iSeg
Desktop

iSeg

Permits user to work on segmentation of genomic and epigenomic profiles. iSeg…

Permits user to work on segmentation of genomic and epigenomic profiles. iSeg uses both simulated and experimental data and can detect segments of any length. Moreover, it can detect candidate…

WIFA
Desktop

WIFA Wavelet-based Identification of Focal genomic Aberrations

Allows detection of broad and focal aberrations in single nucleotide…

Allows detection of broad and focal aberrations in single nucleotide polymorphism SNP array data sets. WIFA can (i) distinguish signals from noise among probes having high aberrations, (ii) detect…

SLM
Desktop

SLM Shifting Level Model

Detects genetic changes that involve gain or loss of segments of genomic DNA…

Detects genetic changes that involve gain or loss of segments of genomic DNA from array comparative genomic hybridization (aCGH) data. SLM is an algorithm that allows user to simulate noisy…

Most popular analytical software

ASCAT
Desktop

ASCAT

A tool for accurate dissection of genome-wide allele-specific copy number in…

A tool for accurate dissection of genome-wide allele-specific copy number in tumors.

Genedata…
Desktop

Genedata Expressionist

A comprehensive, enterprise software solution that manages, analyzes, and…

A comprehensive, enterprise software solution that manages, analyzes, and visualizes massive amounts of raw data from next-generation sequencing, microarray and other genomic technologies.

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