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aCGH and SNP microarray data analysis bioinformatics software tools

Array comparative genomic hybridization (aCGH; Pinkel et al., 1998) and single nucleotide polymorphism (SNP) microarray (Mei et al., 2000) are array-based karyotyping techniques which can help determine the genome abnormalities causing genetic disorders and the acquired genome…

aCGH and SNP array analysis steps

aCGH and SNP array analysis workflow

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aCGH and SNP array analysis workflow schema

Most recent bioinformatics tools

COKGEN
Desktop

COKGEN

Identifies copy number variations (CNVs) from raw copy number. COKGEN consists…

Identifies copy number variations (CNVs) from raw copy number. COKGEN consists in a configurable platform for CNV identification that allows users to: (1) adjust the parameters of our default…

Pigeons
Desktop

Pigeons Photographically InteGrated En-suite for the OligoNucleotide Screening

Allows users to input and analyse microarray data from the Xspecies microarray…

Allows users to input and analyse microarray data from the Xspecies microarray approach. Pigeons employs quantile normalization to address the comparability of intensity distributions between arrays.…

KinSNP
Desktop

KinSNP

Identifies runs of shared homozygosity (ROSHs). KinSNP is a software for…

Identifies runs of shared homozygosity (ROSHs). KinSNP is a software for homozygosity mapping in single nucleotide polymorphism (SNP) arrays from consanguineous families. It was designed to mimic the…

Scan2CNV
Desktop

Scan2CNV

Generates copy number variant (CNV) calls from raw single nucleotide…

Generates copy number variant (CNV) calls from raw single nucleotide polymorphism (SNP) array data.

Most popular analytical software

ASCAT
Desktop

ASCAT

A tool for accurate dissection of genome-wide allele-specific copy number in…

A tool for accurate dissection of genome-wide allele-specific copy number in tumors.

Genedata…
Desktop

Genedata Expressionist

A comprehensive, enterprise software solution that manages, analyzes, and…

A comprehensive, enterprise software solution that manages, analyzes, and visualizes massive amounts of raw data from next-generation sequencing, microarray and other genomic technologies.

Agilent…
Desktop

Agilent CytoGenomics software

A complete CGH and CGH+SNP microarray data analysis and data reporting solution…

A complete CGH and CGH+SNP microarray data analysis and data reporting solution to streamline the day-to-day cytogenetic sample analysis research workflow.

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