aCGH and SNP microarray data analysis bioinformatics software tools

aCGH and SNP array analysis steps

aCGH and SNP array analysis workflow

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aCGH and SNP array analysis workflow schema
Array comparative genomic hybridization (aCGH; Pinkel et al., 1998) and single nucleotide polymorphism (SNP) microarray (Mei et al., 2000) are array-based karyotyping techniques which can help determine the genome abnormalities causing genetic…

aCGH and SNP microarray data analysis bioinformatics software tools

Most Recent Tools

Desktop app
Misclassification-Penalized Posterior

MiPP Misclassification-Penalized Posterior

Assesses the performance of a prediction model. MiPP assesses the sum of the…

Assesses the performance of a prediction model. MiPP assesses the sum of the posterior classification probabilities penalized by the number of incorrectly classified samples. It has shown that the…

Desktop app
matchprobes matchprobes

matchprobes

Provides functions for finding complement, reverse and mismatch sequences and…

Provides functions for finding complement, reverse and mismatch sequences and for counting nucleotide content. matchprobes contains fast algorithms for string and regular expression matching, for…

Desktop app
maPredictDSC maPredictDSC

maPredictDSC

Implements the classification pipeline of the best overall team (Team221) in…

Implements the classification pipeline of the best overall team (Team221) in the IMPROVER Diagnostic Signature Challenge. maPredictDSC facilitates the development of microarray-based prediction…

Desktop app
BeadArray Subversion… BeadArray Subversion of Harshlight

BASH BeadArray Subversion of Harshlight

Adopts the concepts of Harshlight, but implements them in a manner that…

Adopts the concepts of Harshlight, but implements them in a manner that utilizes the unique characteristics of the Illumina technology. BASH requires knowledge of the direct neighbours of a bead, and…

Most Popular Tools

Desktop app
ASCAT ASCAT

ASCAT

A tool for accurate dissection of genome-wide allele-specific copy number in…

A tool for accurate dissection of genome-wide allele-specific copy number in tumors.

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