aCGH and SNP microarray data analysis bioinformatics software tools

Array comparative genomic hybridization (aCGH; Pinkel et al., 1998) and single nucleotide polymorphism (SNP) microarray (Mei et al., 2000) are array-based karyotyping techniques which can help determine the genome abnormalities causing genetic disorders and the acquired genome…

aCGH and SNP array analysis steps

aCGH and SNP array analysis workflow

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aCGH and SNP array analysis workflow schema

Most recent bioinformatics tools

Segmentor3IsBac…
Desktop

Segmentor3IsBack

Performs a fast exact segmentation on data. Segmentor3IsBack is a framework…

Performs a fast exact segmentation on data. Segmentor3IsBack is a framework package that allows the use of various cost functions. It exacts change-point algorithm for the segmentation of profiles…

PREDA
Desktop

PREDA Position RElated Data Analysis

Detects regional variations in genomics data. PREDA implements a procedure to…

Detects regional variations in genomics data. PREDA implements a procedure to analyze the relationships between data and physical genomic coordinates along chromosomes with the final aim of…

RSNF
Desktop

RSNF Robust Similarity Network Fusion

Improves the clustering performance significantly. RSNF is a multi-view…

Improves the clustering performance significantly. RSNF is a multi-view clustering algorithm based on Similarity Network Fusion (SNF) and using robust affine graph construction. This method may be a…

RGCCA
Desktop

RGCCA Regularized and Sparse Generalized Canonical Correlation Analysis

Permits the analysis of several sets of variables (blocks) observed on the same…

Permits the analysis of several sets of variables (blocks) observed on the same group of individuals. RGCCA is a multiblock data analysis that extracts the information which is shared by the J-blocks…

Most popular analytical software

ASCAT
Desktop

ASCAT

A tool for accurate dissection of genome-wide allele-specific copy number in…

A tool for accurate dissection of genome-wide allele-specific copy number in tumors.

Genedata…
Desktop

Genedata Expressionist

A comprehensive, enterprise software solution that manages, analyzes, and…

A comprehensive, enterprise software solution that manages, analyzes, and visualizes massive amounts of raw data from next-generation sequencing, microarray and other genomic technologies.

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