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Acquiarium specifications


Unique identifier OMICS_25190
Name Acquiarium
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Windows
License GNU General Public License version 3.0
Computer skills Medium
Stability No
Maintained No


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Publication for Acquiarium

Acquiarium citations


Reprogramming of Adult Peripheral Blood Cells into Human Induced Pluripotent Stem Cells as a Safe and Accessible Source of Endothelial Cells

PMCID: 5756468
PMID: 29117787
DOI: 10.1089/scd.2017.0132

[…] , AZ) at −30°C. Images of thirty slices at 0.3 μm intervals were acquired in each field at a resolution of 1,392 × 1,040 pixels. The pixel size of the images was 124 × 124 nm.The open-source software Acquiarium [] was used to acquire and analyze the images (, as previously described in detail []. In brief, the nucleus of each cell, which was stained […]


DNA double strand breaks in human induced pluripotent stem cell reprogramming and long term in vitro culturing

PMCID: 5361733
PMID: 28327192
DOI: 10.1186/s13287-017-0522-5

[…] of the cell cycle. By incorporating a nucleoside analogue of thymidine (EdU) into the DNA during replication, only cells in the S or G2 stage are labelled positive []. The images were analysed using Acquiarium software. This software allows us to reliably determine the foci number together with the intensity of the EdU signal for each individual cell and to analyse the data from hundreds of cells […]


Prediction of localization and interactions of apoptotic proteins

J Biomed Sci
PMCID: 2714591
PMID: 19580669
DOI: 10.1186/1423-0127-16-59

[…] Image data acquisition was done using the high-resolution cytometer (HRCM) developed in our laboratory [,,]. The HRCM system was controlled by FISH 2.0 software or by new Acquiarium 1.0 software, both developed in our laboratory [-]. Immunostaining was done using fluorescently labeled primary antibodies labeled using kits with Alexa Fluor dyes 488 and 568 (Invitrogen – […]


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Acquiarium institution(s)
Centre for Biomedical Image Analysis, Faculty of Informatics, Masaryk University, Brno, Czech Republic

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