Tool stats & trends
Looking to identify usage trends or leading experts?
|Interface||Graphical user interface|
|Restrictions to use||None|
|Operating system||Unix/Linux, Windows|
|License||GNU General Public License version 3.0|
No version available
Publication for Acquiarium
Reprogramming of Adult Peripheral Blood Cells into Human Induced Pluripotent Stem Cells as a Safe and Accessible Source of Endothelial Cells
[…] , AZ) at −30°C. Images of thirty slices at 0.3 μm intervals were acquired in each field at a resolution of 1,392 × 1,040 pixels. The pixel size of the images was 124 × 124 nm.The open-source software Acquiarium  was used to acquire and analyze the images (http://cbia.fi.muni.cz/projects/acquiarium.html), as previously described in detail . In brief, the nucleus of each cell, which was stained […]
DNA double strand breaks in human induced pluripotent stem cell reprogramming and long term in vitro culturing
[…] of the cell cycle. By incorporating a nucleoside analogue of thymidine (EdU) into the DNA during replication, only cells in the S or G2 stage are labelled positive . The images were analysed using Acquiarium software. This software allows us to reliably determine the foci number together with the intensity of the EdU signal for each individual cell and to analyse the data from hundreds of cells […]
Prediction of localization and interactions of apoptotic proteins
[…] Image data acquisition was done using the high-resolution cytometer (HRCM) developed in our laboratory [,,]. The HRCM system was controlled by FISH 2.0 software or by new Acquiarium 1.0 software, both developed in our laboratory [-]. Immunostaining was done using fluorescently labeled primary antibodies labeled using kits with Alexa Fluor dyes 488 and 568 (Invitrogen – […]
Looking to check out a full list of citations?
Be the first to review Acquiarium