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Acronym & term extraction software tools and databases | Biomedical text mining

iSimp
Desktop

iSimp A Sentence Simplification System for Biomedical Text

Provides simplified text to enhance the performance of Natural language…

Provides simplified text to enhance the performance of Natural language processing (NLP) systems and text mining (TM) applications. iSimp denotes simplified sentences in a corpus file, along with the…

ADAM
Dataset

ADAM Another Database of Abbreviations in MEDLINE

Covers commonly used abbreviations and their definitions (or long-forms) within…

Covers commonly used abbreviations and their definitions (or long-forms) within MEDLINE titles and abstracts, including both acronym and non-acronym abbreviations. A model of recognizing…

SaRAD
Dataset

SaRAD Simple and Robust Abbreviation Dictionary

Provides an easy to implement, high performance tool for the construction of a…

Provides an easy to implement, high performance tool for the construction of a biomedical symbol dictionary. The algorithms, applied to the MEDLINE document set, result in a high quality dictionary…

Sense…
Dataset

Sense inventories

An inventory of abbreviations and acronyms from clinical texts. Sense…

An inventory of abbreviations and acronyms from clinical texts. Sense inventories created using clinical notes and medical dictionary resources demonstrate challenges with term coverage and resource…

GNS
Dataset

GNS Gene Name Service

Genomics researchers suffer from getting lost in the forest of gene aliases.…

Genomics researchers suffer from getting lost in the forest of gene aliases. Gene Name Service (GNS) solves this problem by providing a comprehensive alias resolution service of all widely used gene…

CASPER
Desktop

CASPER Clean Suppress and Rewrite

The identification of biomedical terms in natural language is essential for…

The identification of biomedical terms in natural language is essential for information extraction from text. Seventeen term rewrite and suppress rules were implemented to increase the number of…

ALICE
Desktop

ALICE Abbreviation LIfter using Corpus-based Extraction

Aims to extract all types of abbreviations with their expansions from a target…

Aims to extract all types of abbreviations with their expansions from a target paper on the fly. ALICE does not only facilitate recognition of an undefined abbreviation in a paper by constructing an…

TerMine
Web

TerMine

Existing terminological resources and scientific databases cannot keep…

Existing terminological resources and scientific databases cannot keep up-to-date with the growth of neologisms. A domain independent method for term recognition is very useful to automatically…

Allie
Dataset

Allie

A search service for abbreviations and long forms utilized in Lifesciences. It…

A search service for abbreviations and long forms utilized in Lifesciences. It provides a solution to the issue that many abbreviations are used in the literature, and polysemous or synonymous…

BioABACUS
Dataset

BioABACUS Biotechnology ABbreviation and Acronym Uncovering Service

A searchable, cross-referenced, database of abbreviations and acronyms in…

A searchable, cross-referenced, database of abbreviations and acronyms in biotechnology and computer science. To researchers in biotechnology in general, BioABACUS should help them avoid christening…

AcroTagger
Desktop

AcroTagger

Identifies and tags the abbreviations in text with xml tags. If the long-form…

Identifies and tags the abbreviations in text with xml tags. If the long-form is given in the text or can be guessed from the document context, then the tag surrounding the abbreviation will contain…

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