ADaCGH protocols

View ADaCGH computational protocol

ADaCGH statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Segmentation Somatic CNA detection chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

ADaCGH specifications

Information


Unique identifier OMICS_00700
Name ADaCGH
Alternative name Analysis of Data from aCGH
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Maintainer


  • person_outline Ramón Diaz-Uriarte <>

Information


Unique identifier OMICS_00700
Name ADaCGH
Alternative name Analysis of Data from aCGH
Interface Web user interface
Restrictions to use None
Programming languages R
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Ramón Diaz-Uriarte <>

Publications for Analysis of Data from aCGH

ADaCGH in pipeline

2012
PMCID: 3257270
PMID: 22253580
DOI: 10.1371/journal.pcbi.1002286

[…] array-cgh data. the standard method for the analysis of the array-cgh data set measured on a nimblegen tiling array is the segmnt algorithm . additionally, all eight methods provided by the adacgh webserver including the best performing methods of two in-depth comparison studies , were applied to the arabidopsis array-cgh data set. from these eight methods, only ace , cbs , fhmm , […]


To access a full list of citations, you will need to upgrade to our premium service.

ADaCGH in publications

 (3)
PMCID: 3368837
PMID: 22701658
DOI: 10.1371/journal.pone.0038528

[…] strains in gc, gu, sg, and ag. comparison was also performed by gc vs gu, gu vs ag, gc vs sg, and ag vs sg. signal ratios of two hybridized strains were log2 transformed and imported into a web tool adacgh, which was used for the analysis of microarray datasets to show gains and losses of genes between the two genomes. the data was centered and segmented in adacgh by employing […]

PMCID: 3257270
PMID: 22253580
DOI: 10.1371/journal.pcbi.1002286

[…] array-cgh data. the standard method for the analysis of the array-cgh data set measured on a nimblegen tiling array is the segmnt algorithm . additionally, all eight methods provided by the adacgh webserver including the best performing methods of two in-depth comparison studies , were applied to the arabidopsis array-cgh data set. from these eight methods, only ace , cbs , fhmm , […]

PMCID: 2756404
PMID: 19285540
DOI: 10.1016/j.bbcan.2009.03.001

[…] the copy number changes significantly , hidden markov models (hmms) , hierarchical clustering along chromosomes and smoothing methods . there are also a number of web-based applications, such as adacgh and cghweb , for viewing and comparing outputs from multiple algorithms. further methods have been developed to identify copy number changes specifically in snp array cgh data, […]


To access a full list of publications, you will need to upgrade to our premium service.

ADaCGH institution(s)
Department of Biochemistry, Universidad Autónoma de Madrid, Instituto de Investigaciones Biomédicas ‘Alberto Sols’ (UAM-CSIC), Madrid, Spain

ADaCGH reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review ADaCGH