ADAM specifications

Information


Unique identifier OMICS_20158
Name ADAM
Alternative name Analysis of Dynamic Algebraic Models
Interface Web user interface
Restrictions to use None
Input data A model as a file.
Input format GINML, TXT
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Additional information


User Guide: http://adam.plantsimlab.org/userGuide.pl Tutorial: http://adam.plantsimlab.org/steptutorial.pl

Publication for Analysis of Dynamic Algebraic Models

ADAM citation

library_books

A Network Biology Approach to Denitrification in Pseudomonas aeruginosa

2015
PLoS One
PMCID: 4338189
PMID: 25706405
DOI: 10.1371/journal.pone.0118235

[…] whole system under the environmental conditions of interest (see ). For model construction and steady state analysis, we used customized Ruby and Perl scripts, which are a part of the source code of Analysis of Dynamic Algebraic Models (ADAM, available at http://adam.plantsimlab.org/), a free of charge web-tool to analyze the dynamics of discrete biological systems []. […]

ADAM institution(s)
Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA, USA; Department of Mathematics, Virginia Tech, Blacksburg, VA, USA; Department of Mathematics, The University of Tennessee, Knoxville, TN, USA; Department of Mathematics, Harvey Mudd College, Claremont, CA, USA; Department of Mathematics and Statistics, University of North Carolina - Greensboro, Greensboro, NC, USA
ADAM funding source(s)
Supported by U.S. Army Research Office Grant Nr. W911NF-09-1- 0538, National Science Foundation Grant Nr. CMMI-0908201 and National Science Foundation Grant Nr. 0755322.

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