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Protocols

ADAN specifications

Information


Unique identifier OMICS_07754
Name ADAN
Restrictions to use None
Maintained Yes

Publication for ADAN

ADAN citations

 (7)
library_books

Incidence of Endophthalmitis after Intravitreal Bevacizumab using Aliquots Prepared On site in 2 Operating Rooms in Kuwait

2016
PMCID: 4759906
PMID: 26957841
DOI: 10.4103/0974-9233.171784

[…] This retrospective study was performed at Al-Bahar Ophthalmology Center and the Department of Ophthalmology at Al-Adan Hospital. Both institutions are part of the Ministry of Health, Kuwait. The Ethics Committee of Al-Bahar Ophthalmology Center approved this study. All efforts were made to adhere to the guideline […]

library_books

Thermodynamic fingerprints of ligand binding to human telomeric G quadruplexes

2015
Nucleic Acids Res
PMCID: 4666371
PMID: 26546516
DOI: 10.1093/nar/gkv1167

[…] CESS () program. In these calculations we used a probe radius of 1.4 Å and the program default sets of atomic radii and polarity. The corresponding ΔC°P values were calculated using a relation ΔC°P = aΔAN + bΔAP where a = (0.45 ± 0.02) cal mol−1 K−1 Å−2 and b = (−0.26 ± 0.02) cal mol−1 K−1 Å−2, () which appears to be appropriate for describing ΔC°P of ligand–DNA association (,). […]

call_split

eTOXlab, an open source modeling framework for implementing predictive models in production environments

2015
J Cheminform
PMCID: 4358905
PMID: 25774224
DOI: 10.1186/s13321-015-0058-6
call_split See protocol

[…] escriptors, Standardizer [] for structure normalization, and R [] for model building and validation. eTOXlab incorporates an in-house developed, highly efficient, implementation of PLS, and our novel ADAN method [] for assessing the applicability domain and providing reliability indexes for the predictions. However, this VM is only a basic configuration and modelers can install additional software […]

library_books

Virtual Interactomics of Proteins from Biochemical Standpoint

2012
PMCID: 3423939
PMID: 22928109
DOI: 10.1155/2012/976385

[…] nt (), and the selected strategy of SVM- and machine-learning-based epitope prediction known as CBTOBE (chapter 3; []). The same accuracy levels were rarely achieved in certain subsets when employing ADAN, KinasePhos 2.0 (), ElliPro, RANKPEP (), SVM and machine-learning-based epitope prediction improved by evolutionary information BEOracle (chapter 3; []) and docking tool HADDOCK (chapter 4; []). […]

library_books

The identification of short linear motif mediated interfaces within the human interactome

2012
Bioinformatics
PMCID: 3315716
PMID: 22328783
DOI: 10.1093/bioinformatics/bts072

[…] hage display experiments.The growth in the number of protein complexes with a determined 3D structure has facilitated the development of structural tools to predict SLiM specificities (; ; ; ; ). The ADAN database () utilizes the FoldX algorithm () to perform an assessment of the stability and affinity of peptide–domain complexes under in silico mutagenesis analysis. However, the requirement for e […]

library_books

Drawing the line between commensal and pathogenic Gardnerella vaginalis through genome analysis and virulence studies

2010
BMC Genomics
PMCID: 2890570
PMID: 20540756
DOI: 10.1186/1471-2164-11-375

[…] Pyrosequencing yielded high coverages of the BV-associated G. vaginalis strain, 5-1 (accession number: ADAM00000000) and the healthy subject isolate, AMD (accession number: ADAN00000000) genomes (~175X and ~130X, respectively). The data for both genomes assembled into approximately 20 contigs greater than 500 bp. Both genomes were estimated at approximately 1.65 Mb. In a […]

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ADAN institution(s)
Instituto de Biologia Molecular y Celular, Edificio Torregaitan, Universidad Miguel Hernandez, Elche, Alicante, Spain

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