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Protocols

ADAPT-NMR specifications

Information


Unique identifier OMICS_03406
Name ADAPT-NMR
Alternative name Assignment-directed Data collection Algorithm utilizing a Probabilistic Toolkit in NMR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Publication for Assignment-directed Data collection Algorithm utilizing a Probabilistic Toolkit in NMR

ADAPT-NMR citations

 (3)
library_books

Mechanism of Histone H3K4me3 Recognition by the Plant Homeodomain of Inhibitor of Growth 3*

2016
PMCID: 5000080
PMID: 27281824
DOI: 10.1074/jbc.M115.690651

[…] onance assignments, 1 mm of the 15N,13C double-labeled ING3 PHD finger was prepared in buffer containing 20 mm Tris-HCl, pH 6.8, 150 mm NaCl, 10 mm DTT, and 10% D2O. The Agilent version of ADAPT-NMR (Assignment-directed Data collection Algorithm utilizing a Probabilistic Toolkit in NMR) was used to optimize simultaneous fast data collection and fully automated NMR backbone assignments. In addition […]

call_split

NMRFAM SDF: a protein structure determination framework

2015
J Biomol NMR
PMCID: 4569665
PMID: 25900069
DOI: 10.1007/s10858-015-9933-8
call_split See protocol

[…] NMRFAM-SDF provides three choices for through-bond experiments: (a) ADAPT-NMR, which uses a non-uniform sampling approach by collecting 3D spectra as tilted 2D planes; (b) non-uniform sampling with iterative soft thresholding ([email protected]) (Hyberts et al. ) with two optio […]

library_books

Robust, Integrated Computational Control of NMR Experiments to Achieve Optimal Assignment by ADAPT NMR

2012
PLoS One
PMCID: 3299752
PMID: 22427982
DOI: 10.1371/journal.pone.0033173

[…] ADAPT-NMR consists of more than 60,000 lines of MATLAB code, shell scripts, and the Varian (Bruker) macro languages. The MATLAB code includes all steps described in the algorithm section except for sp […]

Citations

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ADAPT-NMR institution(s)
National Magnetic Resonance Facility at Madison, University of Wisconsin-Madison, Madison, WI, USA

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