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AdapterRemoval | Cleaning of next-generation sequencing reads

A comprehensive tool for analyzing next-generation sequencing data. AdapterRemoval is able to pre-process both single and paired-end data. The program locates and removes adapter residues from the reads, it is able to combine paired reads if they overlap, and it can optionally trim low-quality nucleotides. Furthermore, it can look for adapter sequence in both the 5' and 3' ends of the reads. This is a flexible tool that can be tuned to accommodate different experimental settings and sequencing platforms producing FASTQ files. AdapterRemoval is shown to be good at trimming adapters from both single-end and paired-end data.

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AdapterRemoval forum

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AdapterRemoval classification

AdapterRemoval specifications

Unique identifier:
OMICS_01081
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
License:
GNU General Public License version 2.0
Stability:
Stable

AdapterRemoval distribution

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AdapterRemoval support

Documentation

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Publications

Institution(s)

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark

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