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Adjacent Site Clustering Aclust

Online

An algorithm to detect sets of neighboring CpG sites that are correlated with each other. The R package Aclust that efficiently implements the A-clustering and the analysis pipeline is provided.

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Aclust classification

Aclust specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Maintained:
Yes

Aclust distribution

versioning

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No versioning.

Aclust support

Documentation

Maintainer

  • Tamar Sofer <>

Credits

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Publications

Institution(s)

Department of Biostatistics, Harvard School of Public Health, Boston, MA, USA; Department of Statistics, University of Connecticut, CT, USA; NIEHS, Epidemiology Branch, MD, Research Triangle Park, NC, USA; Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA; Department of Environmental Health and Department of Epidemiology, Harvard School of Public Health, Boston, MA, USA

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