ADTEx protocols

ADTEx specifications

Information


Unique identifier OMICS_03365
Name ADTEx
Alternative names Aberration Detection in Tumour Exome, CoNVEX
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python, R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Publication for Aberration Detection in Tumour Exome

ADTEx IN pipeline

2016
PMCID: 4867560
PMID: 27247954
DOI: 10.1002/mgg3.201

[…] analysis toolkit (gatk) (depristo et al. 2011). enrichment efficiency was determined based on the percentage of reads that map to the targeted regions with 150 bp padding. (cnvs) were detected using adtex (amarasinghe et al. 2013) with default parameters. in brief, cnvs were identified using tested sample and normal human hapmap dna na18535 average read depths at each captured region (exonic […]

ADTEx institution(s)
Department of Mechanical Engineering, University of Melbourne, Parkville, VIC, Australia

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