AVISPA specifications

Information


Unique identifier OMICS_16615
Name AVISPA
Alternative name Advanced Visualization of Splicing Prediction and Analysis
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Yoseph Barash <>

AVISPA article

AVISPA citation

2017
PMCID: 5636171

[…] based on computationally derived splicing codes, has been used previously to detect and experimentally verify novel regulators of exon splicing in a variety of experimental conditions [71–73]. since avispa was built for analyzing differential splicing determinants around cassette exons, we extracted hg19 coordinates for ensembl-defined exons 11–13 and 12–14, then analyzed the genomic regions […]

AVISPA institution(s)
Department of Genetics, University of Pennsylvania, Philadelphia, PA, USA; Department of Computer and Information Science, University of Pennsylvania, Philadelphia, PA, USA; Universitat Pompeu Fabra, Barcelona, Spain; Department of Electrical and Computer Engineering, University of Toronto, Toronto, Canada; Banting and Best Department of Medical Research, University of Toronto, Toronto, Canada
AVISPA funding source(s)
Supported by FPI grant from the Spanish Ministry of Science; NSERC Steacie and CIHR grants, the University of Toronto, an OGI Spark grant and a Genome Canada grant.

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