Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 151
Release date: Dec 21 2012
Last update date: Mar 22 2013
Access: Public
Dataset link Linkage of genomic biomarkers to whole organism endpoints in a Toxicity Identification Evaluation (TIE)

Experimental Protocol


Wild-collected Ampelisca abdita were exposed to either control (from sites in Long Island Sound, labeled LIS) sediment, toxic (from site on Elizabeth River, labeled ER) sediment, a series of mixtures of LIS and ER sediment, sediments manipulated to alter toxin bioavailability, or toxicant amended sediments. Lethality was scored, and survivors were subjected to mRNA expression analysis via oligo microarray.

Repositories


GEO

GSE41463

ArrayExpress

E-GEOD-41463

BioProject

PRJNA177072

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Contact


mitch kostich