AEHS specifications
Information
| Unique identifier | OMICS_26367 |
|---|---|
| Name | AEHS |
| Alternative name | ArrayExpressHTS |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux, Mac OS, Windows |
| Programming languages | R |
| License | Artistic License version 2.0 |
| Computer skills | Advanced |
| Version | 1.30.0 |
| Stability | Stable |
| Requirements |
methods, stats, RColorBrewer, graphics, BiocGenerics, Biobase, GenomicRanges, Rsamtools, snow, utils, ShortRead, Biostrings, grDevices, edgeR, DESeq, biomaRt, Hmisc, R2HTML, XML, rJava, bitops, sampling, Rsamtools(>=1.19.36), IRanges(>=2.13.11), svMisc, sendmailR
|
| Maintained | Yes |
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Versioning
No version available
Documentation
Maintainer
- person_outline Angela Goncalves
Publication for ArrayExpressHTS
2011 Bioinformatics
PMCID: 3051320
PMID: 21233166
DOI: 10.1093/bioinformatics/btr012
AEHS citation
library_books
Connectivity Mapping for Candidate Therapeutics Identification Using Next Generation Sequencing RNA Seq Data
2013
PLoS One
PMCID: 3694114
PMID: 23840550
DOI: 10.1371/journal.pone.0066902
[…] gher dynamic range in detection. RNA-Seq analysis pipelines are being continually updated and evolving to the state where EBI have supplied an extremely useful resource in an Rcloud, including a tool ArrayExpressHTS , which is very flexible in user choices.Connectivity mapping is a bioinformatic technique to make connections between disease, genes, and drugs and has been implemented since 2006 by […]
AEHS institution(s)
EMBL Outstation-Hinxton, European Bioinformatics Institute, Cambridge, UK
AEHS funding source(s)
Supported by the European Commission under the Seventh Framework Programme’s (FP7) SLING (grant agreement number 226073) and SYBARIS collaborative projects (grant agreement number 242220).
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