AEHS specifications


Unique identifier OMICS_26367
Alternative name ArrayExpressHTS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.30.0
Stability Stable
methods, stats, RColorBrewer, graphics, BiocGenerics, Biobase, GenomicRanges, Rsamtools, snow, utils, ShortRead, Biostrings, grDevices, edgeR, DESeq, biomaRt, Hmisc, R2HTML, XML, rJava, bitops, sampling, Rsamtools(>=1.19.36), IRanges(>=2.13.11), svMisc, sendmailR
Maintained Yes




No version available



  • person_outline Angela Goncalves

Publication for ArrayExpressHTS

AEHS citation


Connectivity Mapping for Candidate Therapeutics Identification Using Next Generation Sequencing RNA Seq Data

PLoS One
PMCID: 3694114
PMID: 23840550
DOI: 10.1371/journal.pone.0066902

[…] gher dynamic range in detection. RNA-Seq analysis pipelines are being continually updated and evolving to the state where EBI have supplied an extremely useful resource in an Rcloud, including a tool ArrayExpressHTS , which is very flexible in user choices.Connectivity mapping is a bioinformatic technique to make connections between disease, genes, and drugs and has been implemented since 2006 by […]

AEHS institution(s)
EMBL Outstation-Hinxton, European Bioinformatics Institute, Cambridge, UK
AEHS funding source(s)
Supported by the European Commission under the Seventh Framework Programme’s (FP7) SLING (grant agreement number 226073) and SYBARIS collaborative projects (grant agreement number 242220).

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