AEHS specifications
Information
Unique identifier | OMICS_26367 |
---|---|
Name | AEHS |
Alternative name | ArrayExpressHTS |
Software type | Package/Module |
Interface | Command line interface |
Restrictions to use | None |
Operating system | Unix/Linux, Mac OS, Windows |
Programming languages | R |
License | Artistic License version 2.0 |
Computer skills | Advanced |
Version | 1.30.0 |
Stability | Stable |
Requirements |
methods, stats, RColorBrewer, graphics, BiocGenerics, Biobase, GenomicRanges, Rsamtools, snow, utils, ShortRead, Biostrings, grDevices, edgeR, DESeq, biomaRt, Hmisc, R2HTML, XML, rJava, bitops, sampling, Rsamtools(>=1.19.36), IRanges(>=2.13.11), svMisc, sendmailR
|
Maintained | Yes |
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Versioning
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Documentation
Maintainer
- person_outline Angela Goncalves
Publication for ArrayExpressHTS
AEHS citation
Connectivity Mapping for Candidate Therapeutics Identification Using Next Generation Sequencing RNA Seq Data
[…] gher dynamic range in detection. RNA-Seq analysis pipelines are being continually updated and evolving to the state where EBI have supplied an extremely useful resource in an Rcloud, including a tool ArrayExpressHTS , which is very flexible in user choices.Connectivity mapping is a bioinformatic technique to make connections between disease, genes, and drugs and has been implemented since 2006 by […]
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