Computational protocol: Genome wide DNA methylation profile in mungbean

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Protocol publication

[…] With data >90% of the methylation level and supporting depth >10, paralogous genes were identified based on peptide homology using the NCBI blastp program (E-value ≤ 1e-5). The paralogous gene pairs were then clustered using MCScanX. […]

Pipeline specifications

Software tools BLASTP, MCScanX
Application Genome annotation
Chemicals Cytosine, Nucleotides