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affy

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Contains functions for the storage, management and analysis of oligonucleotide arrays. affy provides the user with extreme flexibility when carrying out an analysis and make it possible to access and manipulate probe intensity data. The affy package was designed to balance user control of data analysis with convenience. Graphical user interfaces, object oriented programming and modular function design enhance the convenience of the package.

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affy classification

affy specifications

Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU Lesser General Public License version 3.0
Version:
1.52.0
Requirements:
BiocGenerics, Biobase
Interface:
Command line interface
Biological technology:
Affymetrix
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

affy distribution

versioning

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affy support

Documentation

Maintainer

  • Laurent Gautier <>

Credits

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Publications

Institution(s)

Center for Biological Sequence Analysis (CBS), Technical University of Denmark, Lyngby, Denmark; Department of Mathematical Sciences, Johns Hopkins University, Baltimore, MD, USA; Group in Biostatistics, University of California, Berkeley, CA, USA; Department of Biostatistics, Johns Hopkins University, Baltimore, MD, USA

Funding source(s)

This work was funded by the Danish Biotechnology Instrument Center and the Hopkins PGA Administrative and Bioinformatics Component (P01 HL 66583).

Link to literature

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