AffyExpress statistics

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Citations per year

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Popular tool citations

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Associated diseases

Associated diseases

AffyExpress specifications


Unique identifier OMICS_02015
Name AffyExpress
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Affymetrix
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Version 1.46.0
Stability Stable
limma, R(>=2.10), genefilter, affy(>=1.23.4), R2HTML, hgu95av2cdf, affyPLM, gcrma, simpleaffy, hgu95av2, test3cdf, estrogen, annaffy
Maintained Yes


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AffyExpress in publications

PMCID: 4587957
PMID: 26418249
DOI: 10.1371/journal.pcbi.1004498

[…] measurements (ic50) and cell line annotation data are available from the cgp website ( gene expression profiles for all cgp cell lines were downloaded from affyexpress under accession number e-mtab-783. chemical structural information for each drug was available from pubchem (, over the past two decades, substantial […]

PMCID: 3520972
PMID: 23251415
DOI: 10.1371/journal.pone.0051013

[…] and are meant to compare the relative quality of samples. there are currently no methods to compare different studies or different platforms. a number of r packages implement those quality metrics: affyexpress, simpleaffy , and yaqcaffy for affymetrix arrays, arrayquality for spotted arrays and beadarray for illumina beadarray. once metrics have been calculated, outliers must be determined […]

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