AffyMAPSDetector specifications

Information


Unique identifier OMICS_09484
Name AffyMAPSDetector
Alternative name Affymetrix MicroArray Probe SNP Detector
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Affymetrix
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.0
Stability No
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Publication for Affymetrix MicroArray Probe SNP Detector

AffyMAPSDetector citations

 (2)
library_books

ArrayInitiative a tool that simplifies creating custom Affymetrix CDFs

2011
BMC Bioinformatics
PMCID: 3113937
PMID: 21548938
DOI: 10.1186/1471-2105-12-136

[…] ter microarray probes that are likely to report incorrect or misleading intensities based upon certain biological properties, such as the presence of SNPs in the probe sequence (e.g. as identified by AffyMapsDetector []), probe cross-hybridization, internal structure in either the probe or target sequence that reduces binding affinity, and probe intensities that fall outside the linear range of th […]

library_books

A white box approach to microarray probe response characterization: the BaFL pipeline

2009
BMC Bioinformatics
PMCID: 2804686
PMID: 20040098
DOI: 10.1186/1471-2105-10-449

[…] BaFL: Biologically applied Filter Level; AffyMAPSDetector: Affymetrix MicroArray Probe SNP Detector; α (alpha): 0.05 is the common Type I error; Batch: a set of microarray chips which underwent hybridizations at the same time; DE: statistically significant di […]

AffyMAPSDetector institution(s)
Department of Computer and Information Science, Indiana University Purdue University Indianapolis, Indianapolis, IN, USA; Eli Lilly and Company, Indianapolis, IN, USA; Computer Science/Bioinformatics program, University of North Carolina at Charlotte, Charlotte, NC, USA

AffyMAPSDetector reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review AffyMAPSDetector