AffyPipe statistics

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Citations per year

Citations chart

Popular tool citations

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Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

AffyPipe specifications


Unique identifier OMICS_05203
Name AffyPipe
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Output format PLINK
Biological technology Affymetrix
Operating system Unix/Linux, Mac OS
Programming languages Python, Shell (Bash)
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Ezequiel L. Nicolazzi <>

Publication for AffyPipe

AffyPipe in publication

PMCID: 5628821
PMID: 28981529
DOI: 10.1371/journal.pone.0185220

[…] total of 1605 individuals (1376 river buffalo, 200 swamp buffalo, 15 cape buffalo, 14 anoa) to assess the performance of the chip. the data were processed through an automated open-source pipeline, affypipe [], to extract and edit snp probes []. a total of 67,330 and 9,229 snp probes were validated as polymorphic and monomorphic high quality snps (polyhighresolution and monohighresolution), […]

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AffyPipe institution(s)
Fondazione Parco Tecnologico Padano, Lodi (LO), Italy
AffyPipe funding source(s)
Italian Ministry of Education, University and Research, project GenHome (D.M. 505/Ric) and the European Union’s Seventh Framework Programme, project Gene2Farm (G.A. 289592).

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