AffyRNADegradation statistics

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Citations per year

Number of citations per year for the bioinformatics software tool AffyRNADegradation
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Protocols

AffyRNADegradation specifications

Information


Unique identifier OMICS_01975
Name AffyRNADegradation
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.26.0
Stability Stable
Requirements
methods, affy, R(>=2.9.0), AmpAffyExample
Maintained Yes

Versioning


No version available

Documentation


Publication for AffyRNADegradation

AffyRNADegradation citations

 (2)
library_books

Immunological landscape of consensus clusters in colorectal cancer

2017
Oncotarget
PMCID: 5739639
PMID: 29285252
DOI: 10.18632/oncotarget.22169

[…] 671, GSE9254, GSE13067, GSE13294, GSE14333, GSE17536, GSE17537, GSE18105, GSE19860, GSE28702, GSE33113, GSE35896, GSE37364 and GSE39582), see [–]. All arrays were assessed for RNA quality using the “AffyRNADegradation” package []. Samples with dk < 0.45 [equivalent of RNA integrity measure RIN > 7] were removed from further analysis as proposed by Fasold et al. [].Raw data was normalized by RMA o […]

call_split

Estimating RNA quality using GeneChip microarrays

2012
BMC Genomics
PMCID: 3519671
PMID: 22583818
DOI: 10.1186/1471-2164-13-186
call_split See protocol

[…] and builds upon the popular affy package []. The respective program and data are available under http://www.izbi.uni-leipzig.de/downloads_links/programs/rna_integrity.php and as Bioconductor package AffyRNADegradation. […]


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AffyRNADegradation institution(s)
Interdisciplinary Center for Bioinformatics, Universität Leipzig, Leipzig, Germany

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