AffyRNADegradation specifications

Information


Unique identifier OMICS_01975
Name AffyRNADegradation
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.26.0
Stability Stable
Requirements
methods, affy, R(>=2.9.0), AmpAffyExample
Maintained Yes

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Publication for AffyRNADegradation

AffyRNADegradation in publications

 (2)
PMCID: 5739639
PMID: 29285252
DOI: 10.18632/oncotarget.22169

[…] gse9254, gse13067, gse13294, gse14333, gse17536, gse17537, gse18105, gse19860, gse28702, gse33113, gse35896, gse37364 and gse39582), see [–]. all arrays were assessed for rna quality using the “affyrnadegradation” package []. samples with dk < 0.45 [equivalent of rna integrity measure rin > 7] were removed from further analysis as proposed by fasold et al. []., raw data was normalized […]

PMCID: 3519671
PMID: 22583818
DOI: 10.1186/1471-2164-13-186

[…] thus enables to use the full ensemble of probes in downstream analysis without loss of information., the tongs visualizations and the degradation measures are implemented in the bioconductor package affyrnadegradation. probe distance files are available under the website http://www.izbi.uni-leipzig.de/downloads_links/programs/rna_integrity.php., affymetrix microarray raw intensity data (cel-file […]


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AffyRNADegradation institution(s)
Interdisciplinary Center for Bioinformatics, Universität Leipzig, Leipzig, Germany

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