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Afree specifications


Unique identifier OMICS_23577
Name Afree
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data Two formated proteome files.
Input format FASTA+FASTA
Output data A table of pairwise similarities.
Operating system Unix/Linux, Mac OS
Computer skills Advanced
Version 2.0
Stability Beta
Maintained No



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Afree in publications

PMCID: 5801468
PMID: 29437925
DOI: 10.1128/mBio.02359-17

[…] nitride microcantilever (olympus rc800) with a tip radius of 15 nm, a nominal spring constant of 0.3 to 0.4 n/m, and a resonance frequency of 69 khz (~24 khz in liquid) that was excited at an afree amplitude of ~4 nm (a/aratio = 0.85 to 0.90). once the holdfast was centered in the scan area, the afm tip was moved to the top of the particle and a set of 3 to 8 force-displacement (f versus […]

PMCID: 5691195
PMID: 29146980
DOI: 10.1038/s41467-017-01691-1

[…] molecules were divided in two types, low (n = 6) or high (n = 26) force. the force values were obtained from histograms generated by pooling the data of both types separately (supplementary fig. ) afree energy obtained at force at which the unfolding and folding lifetimes are equal (f 1/2) times the change of extension between folded and unfolded states corrected by the stretching force […]

PMCID: 5660116
PMID: 29079723
DOI: 10.1038/s41467-017-01298-6

[…] m{\sigma }}_{{\bf{k}}\sigma }^{{\rm{mw}},{\rm{ret}},a}\left( {e_{{\bf{k}}\sigma }^a} \right)} \right|}_{{\rm{free}}}}} \hfill \\ \end{array}$$\end{document}ekσa≈εkσa+reσkσgw,ret,a(ekσa)free=εkσa+σkσf,afree+reσkσmw,ret,aekσafreewith the montroll–ward contribution26\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} […]

PMCID: 5676014
PMID: 29151987
DOI: 10.2174/1874104501711010109

[…] electron microscopic (sem) studies []. polyacrylonitrile grafted agar/ sodium alginate had been synthesized in aqueous medium under reflex condition in the presence of potassiumpursulfate as afree radical initiator []. , most coal preparations are carried out in water medium and moisture and water content are problematic in handling and specific energy value. a novel polymeric […]

PMCID: 5714123
PMID: 29036649
DOI: 10.1093/nar/gkx846

[…] (figure and table ). additionally, we confirmed our findings using full-length smad3, supporting the conclusion that the mh1 domain confers the complete nucleic acid binding activity of smad3 ()., afree energies of rna folding were calculated with the mfold server using default parameters (). duplex energies were calculated using the nearest neighbor method at 1 m nacl, 37°c and ph 7 ()., ba […]

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