AFS specifications


Unique identifier OMICS_14708
Name AFS
Alternative name All-Food-Seq
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data DNA short read dataset
Output data Estimation of relative species proportions
Biological technology Illumina
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Version 0.3
Stability Stable
Requirements BWA, SAMtools
Maintained Yes



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  • person_outline Thomas Hankeln <>

Publications for All-Food-Seq

AFS institution(s)
Institute of Computer Science, University of Mainz, Germany; Institute of Molecular Genetics, Johannes Gutenberg University, Mainz, Germany; Official Food Control Authority Canton Zürich, Zürich, Switzerland; School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, GA, USA
AFS funding source(s)
This work was supported by the Johannes Gutenberg University Center for Computational Sciences, JGU Mainz intramural funding, the Ministry of Justice and for Consumer Safety Rhineland-Palatinate, and the Carl-Zeiss-Foundation.

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