AftrRAD statistics

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Citations per year

Number of citations per year for the bioinformatics software tool AftrRAD

Tool usage distribution map

This map represents all the scientific publications referring to AftrRAD per scientific context
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AftrRAD specifications


Unique identifier OMICS_08904
Name AftrRAD
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl, R
Computer skills Advanced
Stability Stable
Maintained Yes


No version available



Publication for AftrRAD

AftrRAD citations


Hybrid origin of European Vipers (Vipera magnifica and Vipera orlovi) from the Caucasus determined using genomic scale DNA markers

BMC Evol Biol
PMCID: 4828770
PMID: 27068498
DOI: 10.1186/s12862-016-0647-7

[…] ed to pool individuals in equimolar concentrations for sequencing. Pooled libraries were run in single read 50-bp runs on an Illumina sequencer. SNP identification and genotyping were performed using AftrRAD version 3.3 [] with the following parameters: Phred quality scores had to exceed 20 to retain the base call, minimum average read depth was 20 per allele, reads were considered allelic if they […]


Genetic diversity in migratory bats: Results from RADseq data for three tree bat species at an Ohio windfarm

PMCID: 4730867
PMID: 26824001
DOI: 10.7717/peerj.1647

[…] Denovo locus identification and genotyping was performed separately for each species with AftrRAD version 4.1 (), which can assemble RADseq loci in a computationally efficient manner, while accounting for indel variation among alleles. AftrRAD analyses were carried out with default paramet […]

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AftrRAD institution(s)
Department of Evolution, Ecology, and Organismal Biology, Aronoff Laboratory, The Ohio State University, Columbus, OH, USA; Ohio Biodiversity Conservation Partnership, Aronoff Laboratory, The Ohio State University, Columbus, OH, USA

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