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AftrRAD specifications

Information


Unique identifier OMICS_08904
Name AftrRAD
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl, R
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


Publication for AftrRAD

AftrRAD citation

library_books

Hybrid origin of European Vipers (Vipera magnifica and Vipera orlovi) from the Caucasus determined using genomic scale DNA markers

2016
PMCID: 4828770
PMID: 27068498
DOI: 10.1186/s12862-016-0647-7

[…] to pool individuals in equimolar concentrations for sequencing. pooled libraries were run in single read 50-bp runs on an illumina sequencer. snp identification and genotyping were performed using aftrrad version 3.3 [] with the following parameters: phred quality scores had to exceed 20 to retain the base call, minimum average read depth was 20 per allele, reads were considered allelic […]


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AftrRAD institution(s)
Department of Evolution, Ecology, and Organismal Biology, Aronoff Laboratory, The Ohio State University, Columbus, OH, USA; Ohio Biodiversity Conservation Partnership, Aronoff Laboratory, The Ohio State University, Columbus, OH, USA

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