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AftrRAD specifications


Unique identifier OMICS_08904
Name AftrRAD
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl, R
Computer skills Advanced
Stability Stable
Maintained Yes


No version available



Publication for AftrRAD

AftrRAD citation


Hybrid origin of European Vipers (Vipera magnifica and Vipera orlovi) from the Caucasus determined using genomic scale DNA markers

PMCID: 4828770
PMID: 27068498
DOI: 10.1186/s12862-016-0647-7

[…] to pool individuals in equimolar concentrations for sequencing. pooled libraries were run in single read 50-bp runs on an illumina sequencer. snp identification and genotyping were performed using aftrrad version 3.3 [] with the following parameters: phred quality scores had to exceed 20 to retain the base call, minimum average read depth was 20 per allele, reads were considered allelic […]

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AftrRAD institution(s)
Department of Evolution, Ecology, and Organismal Biology, Aronoff Laboratory, The Ohio State University, Columbus, OH, USA; Ohio Biodiversity Conservation Partnership, Aronoff Laboratory, The Ohio State University, Columbus, OH, USA

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