AftrRAD statistics

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Citations per year

Number of citations per year for the bioinformatics software tool AftrRAD
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Tool usage distribution map

This map represents all the scientific publications referring to AftrRAD per scientific context
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Associated diseases

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AftrRAD specifications

Information


Unique identifier OMICS_08904
Name AftrRAD
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl, R
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


Publication for AftrRAD

AftrRAD citations

 (2)
library_books

Hybrid origin of European Vipers (Vipera magnifica and Vipera orlovi) from the Caucasus determined using genomic scale DNA markers

2016
BMC Evol Biol
PMCID: 4828770
PMID: 27068498
DOI: 10.1186/s12862-016-0647-7

[…] ed to pool individuals in equimolar concentrations for sequencing. Pooled libraries were run in single read 50-bp runs on an Illumina sequencer. SNP identification and genotyping were performed using AftrRAD version 3.3 [] with the following parameters: Phred quality scores had to exceed 20 to retain the base call, minimum average read depth was 20 per allele, reads were considered allelic if they […]

library_books

Genetic diversity in migratory bats: Results from RADseq data for three tree bat species at an Ohio windfarm

2016
PeerJ
PMCID: 4730867
PMID: 26824001
DOI: 10.7717/peerj.1647

[…] Denovo locus identification and genotyping was performed separately for each species with AftrRAD version 4.1 (), which can assemble RADseq loci in a computationally efficient manner, while accounting for indel variation among alleles. AftrRAD analyses were carried out with default paramet […]


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AftrRAD institution(s)
Department of Evolution, Ecology, and Organismal Biology, Aronoff Laboratory, The Ohio State University, Columbus, OH, USA; Ohio Biodiversity Conservation Partnership, Aronoff Laboratory, The Ohio State University, Columbus, OH, USA

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