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|Alternative name||Ashbya Genome Database|
|Restrictions to use||None|
Publications for Ashbya Genome Database
Chromosome Number Reduction in Eremothecium coryli by Two Telomere to Telomere Fusions
[…] ession number AZAH00000000. The mitochondrial genome has not been assembled.The E. coryli genes were compared with the A. gossypii, E. cymbalariae, and Saccharomyces cerevisiae genomes available from Ashbya Genome Database (http://agd.vital-it.ch/index.html, last accessed May 15, 2014) and Saccharomyces Genome Database (http://www.yeastgenome.org, last accessed May 15, 2014) and GenBank using loca […]
Structural Mutants of the Spindle Pole Body Cause Distinct Alteration of Cytoplasmic Microtubules and Nuclear Dynamics in Multinucleated Hyphae
[…] rch was performed with PredictNLS (http://cubic.bioc.columbia.edu/predictNLS/) and Prosite (http://www.expasy.org/prosite/PS50079). Protein alignments were performed with sequences retrieved from the Ashbya Genome Database (http://agd.vital-it.ch/; ) and the Saccharomyces Genome Database (http://www.yeastgenome.org/) by using the EMBOSS Pairwise Alignment Algorithms (Blosum62 Matrix, gap open 10, […]
FUNYBASE: a FUNgal phYlogenomic dataBASE
[…] AFTOL: Assembling the Fungal Tree of Life; AGD: Ashbya genome database; AIC: Akaike information criterion; BBH: Best bi-directional hit; BIC: Bayesian information criterion; BLASTP: Basic local alignment search tool for proteins; BLASTX: Basic loca […]
Evolution of the holozoan ribosome biogenesis regulon
[…] loci in Nv, Mb, and Ps, we used best reciprocal hits to identify orthologs in the respective genomes of the closest related species. A set of RiBi orthologs for Ag, Nc, and Sp were retrieved from the Ashbya Genome Database project base on Ensembl release 40. For identifying orthologous loci in Kl, Dh, Cg, Ca, and Yl we used ortholgy calls from the Génolevures Genomic Project. The DNA sequences for […]
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