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AGD specifications

Information


Unique identifier OMICS_03095
Name AGD
Alternative name Ashbya Genome Database
Restrictions to use None
Version 3.0
Maintained Yes

Publications for Ashbya Genome Database

AGD citations

 (4)
call_split

Chromosome Number Reduction in Eremothecium coryli by Two Telomere to Telomere Fusions

2014
Genome Biol Evol
PMCID: 4040997
PMID: 24803574
DOI: 10.1093/gbe/evu089
call_split See protocol

[…] ession number AZAH00000000. The mitochondrial genome has not been assembled.The E. coryli genes were compared with the A. gossypii, E. cymbalariae, and Saccharomyces cerevisiae genomes available from Ashbya Genome Database (http://agd.vital-it.ch/index.html, last accessed May 15, 2014) and Saccharomyces Genome Database (http://www.yeastgenome.org, last accessed May 15, 2014) and GenBank using loca […]

call_split

Structural Mutants of the Spindle Pole Body Cause Distinct Alteration of Cytoplasmic Microtubules and Nuclear Dynamics in Multinucleated Hyphae

2010
Mol Biol Cell
PMCID: 2828962
PMID: 20053682
DOI: 10.1091/mbc.E09-07-0555
call_split See protocol

[…] rch was performed with PredictNLS (http://cubic.bioc.columbia.edu/predictNLS/) and Prosite (http://www.expasy.org/prosite/PS50079). Protein alignments were performed with sequences retrieved from the Ashbya Genome Database (http://agd.vital-it.ch/; ) and the Saccharomyces Genome Database (http://www.yeastgenome.org/) by using the EMBOSS Pairwise Alignment Algorithms (Blosum62 Matrix, gap open 10, […]

library_books

FUNYBASE: a FUNgal phYlogenomic dataBASE

2008
BMC Bioinformatics
PMCID: 2600828
PMID: 18954438
DOI: 10.1186/1471-2105-9-456

[…] AFTOL: Assembling the Fungal Tree of Life; AGD: Ashbya genome database; AIC: Akaike information criterion; BBH: Best bi-directional hit; BIC: Bayesian information criterion; BLASTP: Basic local alignment search tool for proteins; BLASTX: Basic loca […]

call_split

Evolution of the holozoan ribosome biogenesis regulon

2008
BMC Genomics
PMCID: 2570694
PMID: 18816399
DOI: 10.1186/1471-2164-9-442
call_split See protocol

[…] loci in Nv, Mb, and Ps, we used best reciprocal hits to identify orthologs in the respective genomes of the closest related species. A set of RiBi orthologs for Ag, Nc, and Sp were retrieved from the Ashbya Genome Database project base on Ensembl release 40. For identifying orthologous loci in Kl, Dh, Cg, Ca, and Yl we used ortholgy calls from the Génolevures Genomic Project. The DNA sequences for […]


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AGD institution(s)
Department of Applied Microbiology, Biozentrum, Basel, Switzerland; Swiss Institute of Bioinformatics, Basel, Switzerland

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