AgIn specifications

Unique identifier:
OMICS_12442
Software type:
Package/Module
Restrictions to use:
None
Output data:
The GFF file reports all the predicted hypomethylated regions.
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes
Name:
Aggregate on Intervals
Interface:
Command line interface
Input data:
The program requires a modification.csv file as a primary input, which is produced by P_ModificationDetection module of SMRT Pipe.
Biological technology:
Pacific Biosciences
License:
BSD 3-clause “New” or “Revised” License
Stability:
Stable

versioning

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AgIn support

Documentation

Maintainer

  • Yuta Suzuki <>

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Publications

Institution(s)

Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, Japan; Pacific Biosciences, Menlo Park, CA, USA; Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan; Department of Neurology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan

Funding source(s)

This work was supported in part by JSPS (Grant-in-Aid for JSPS Fellows 15J03645), by MEXT (Grants-in-Aid for Scientific Research 22129008 and 23241058 and by JST (CREST).

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