ARK specifications

Unique identifier:
OMICS_10702
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
Parallelization:
OpenMP
Stability:
Stable
Maintained:
Yes
Name:
Aggregation of Reads by K-means
Interface:
Command line interface
Input format:
FASTA
Programming languages:
MATLAB
Computer skills:
Advanced
Requirements:
DNA_utils

versioning

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ARK support

Documentation

Maintainer

  • Saikat Chatterjee <>

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Credits

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Publications

Institution(s)

Department of Mathematics, Oregon State University, Corvallis, USA; Department of Communication Theory, KTH Royal Institute of Technology, Stockholm, Sweden; MRC Tropical Epidemiology Group, London School of Hygiene and Tropical Medicine, London, UK; Illumina Cambridge Ltd., Chesterford Research Park, Essex, UK; Department of Electronic and Electrical Engineering, University of Sheffield, Sheffield, UK; Department of Physics, Tsinghua University, Beijing, China; Department of Mathematics and Statistics, University of Helsinki, Helsinki, Finland

Funding source(s)

The Swedish Research Council Linnaeus Centre ACCESS; ERC grant 239784; the Academy of Finland Center of Excellence COIN; the Academy of Finland; the Scottish Government’s Rural and Environment Science and Analytical Services Division (RESAS); the UK MRC/DFID grant G1002369; Illumina Cambridge Ltd

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