Agilent Genomic Workbench statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

Protocols

Agilent Genomic Workbench specifications

Information


Unique identifier OMICS_00702
Name Agilent Genomic Workbench
Software type Package/Module
Interface Command line interface
Restrictions to use License purchase required
Biological technology Agilent Technologies
Operating system Unix/Linux, Mac OS, Windows
License Commercial
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Agilent Genomic Workbench citations

 (16)
call_split

Identification of novel genomic imbalances in Saudi patients with congenital heart disease

2018
PMCID: 5784682
PMID: 29416564
DOI: 10.1186/s13039-018-0356-6
call_split See protocol

[…] lent DNA Microarray Scanner (Agilent Technologies) or GenePix 4000B (Molecular Devices, Sunnyvale, CA). The images were processed using Agilent Feature Extraction software (v10.0), and transferred to Agilent Genomic Workbench software for data analysis, CNV visualization, and detection. During the analysis, softwares defaults were not changed and the analysis was based on human genome build hg19/G […]

call_split

Mechanisms for Complex Chromosomal Insertions

2016
PLoS Genet
PMCID: 5120786
PMID: 27880765
DOI: 10.1371/journal.pgen.1006446
call_split See protocol

[…] l NA10851 as male control and Individual NA15510 as female control). Scanned array images were processed using Agilent Feature Extraction software (version 10) and extracted files were analyzed using Agilent Genomic Workbench (version 7.0.4.0). Array designs and sequence alignment for breakpoint analysis were based on the February 2009 genome build (GRCh37/hg19 assembly). […]

call_split

Identification of small marker chromosomes using microarray comparative genomic hybridization and multicolor fluorescent in situ hybridization

2016
PMCID: 4977864
PMID: 27508004
DOI: 10.1186/s13039-016-0273-5
call_split See protocol

[…] and hybridization were performed following the manufacturer’s instructions. Scanned images were quantified using Agilent Feature Extraction software (v10.0), and the resulting data were imported into Agilent Genomic Workbench 7.0.4.0 software for visualization, and copy number variations were detected using the Aberration Detection Method-2 (ADM-2) algorithm. All genomic coordinates were based on […]

call_split

Genetic–pathologic characterization of myeloproliferative neoplasms

2016
PMCID: 4973314
PMID: 27444979
DOI: 10.1038/emm.2016.55
call_split See protocol

[…] ay slides were scanned at a three-micron resolution on an Agilent microarray scanner, and the raw data were extracted using Agilent Feature Extraction software V10.7.3.1. Raw data were analyzed using Agilent Genomic Workbench Software, CGH module 7.0.4.0 (Agilent Technologies). Genomic alterations were reported based on the following criteria: amplifications and deletions were scored when there wa […]

call_split

Identification of small segmental translocations in patients with repeated implantation failure and recurrent miscarriage using next generation sequencing after in vitro fertilization/intracytoplasmic sperm injection

2015
PMCID: 4696251
PMID: 26719770
DOI: 10.1186/s13039-015-0207-7
call_split See protocol

[…] rotocol of Agilent oligonucleotide array-based CGH for single cell analysis (Agilent Tech) and scanning on Agilent microarray scanner. Then Agilent feature extraction used for data interpretation and Agilent Genomic Workbench 7.0/CytoGenomics v2.9 used for analysis. […]

library_books

Advantages of a next generation sequencing targeted approach for the molecular diagnosis of retinoblastoma

2015
BMC Cancer
PMCID: 4632486
PMID: 26530098
DOI: 10.1186/s12885-015-1854-0

[…] ps, following the manufacturer’s instructions, the arrays were analyzed using the Agilent scanner G2505C and Feature Extraction software v.10.7. A graphical overview of the results was obtained using Agilent Genomic Workbench v.7.0.Copy number variations (CNVs) were identified with the ADM2 (Aberration Detection Method) algorithm and filtered consulting the Database of Genomic Variants []. […]

Citations

Looking to check out a full list of citations?

Agilent Genomic Workbench institution(s)
Agilent, Santa Clara, CA, USA

Agilent Genomic Workbench reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Agilent Genomic Workbench