AgileVariantMapper statistics

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Associated diseases

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AgileVariantMapper specifications

Information


Unique identifier OMICS_00122
Name AgileVariantMapper
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Windows
Programming languages Visual Basic
Computer skills Medium
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Ian M. Carr <>

Publication for AgileVariantMapper

AgileVariantMapper in publications

 (2)
PMCID: 4707028
PMID: 26788539
DOI: 10.1002/mgg3.181

[…] hgmd and the allele frequency was <5% in the esp, 1000gp, and aric datasets., regions of aoh (autozygosity) were determined by a transformation of full snp variant calls from exome sequencing with agilevariantmapper software (carr et al. ). minimum read depth was set at 5, and the heterozygosity cutoff was 25% of reads., dna (100 ng) served as pcr substrate in a 25 μl volume containing 0.5 μmol […]

PMCID: 3855772
PMID: 24324832
DOI: 10.1371/journal.pone.0082810

[…] whole exomes. genotypes derived from whole exome data were utilized to identify homozygous runs as previously described [], where the authors developed two computer programs, agilegenotyper and agilevariantmapper that can identify autozygous regions from an individual's exome sequence data. the two programs differ in that agilevariantmapper uses the genotypes of all positions found ab […]


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AgileVariantMapper institution(s)
School of Medicine, University of Leeds, Leeds, UK

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