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AGIS specifications


Unique identifier OMICS_15159
Alternative name Apoptosis Gene Information System
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained No


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Publication for Apoptosis Gene Information System

AGIS citations


Identification, Validation and Utilization of Novel Nematode Responsive Root Specific Promoters in Arabidopsis for Inducing Host Delivered RNAi Mediated Root Knot Nematode Resistance

Front Plant Sci
PMCID: 5733009
PMID: 29312363
DOI: 10.3389/fpls.2017.02049

[…] e infection yielded 780 probe sets, with 42 probe sets showing a constant up-regulation in both stages (Figure , Supplementary Table ).These probe sets were converted to Arabidopsis Gene Identifiers (AGIs) and collated to identify candidate NRRS genes. If multiple probes represented a single gene then the probe with highest median expression across samples was selected to represent the gene, and i […]


Combined transcriptome and metabolome analyses to understand the dynamic responses of rice plants to attack by the rice stem borer Chilo suppressalis (Lepidoptera: Crambidae)

BMC Plant Biol
PMCID: 5142284
PMID: 27923345
DOI: 10.1186/s12870-016-0946-6

[…] onvert.cgi). Only genes included in RNA-seq containing Arabidopsis probe set identifies were kept for analyses. In some cases, there were two probe sets for one AGI, while in few cases there were two AGIs for one probe set. This indicates that lines were duplicated and sets were thus discarded. […]


Life without complex I: proteome analyses of an Arabidopsis mutant lacking the mitochondrial NADH dehydrogenase complex

J Exp Bot
PMCID: 4867900
PMID: 27122571
DOI: 10.1093/jxb/erw165

[…] se TAIR10 database, modified to also include common contaminants (keratin, trypsin), MS-standards (BSA, fibrinopeptide) and known modifications of mitochondrial encoded proteins based on RNA-editing (AGIs) using Proteome Discoverer (Thermo Fisher Scientific, Dreieich, Germany). Search runs employed the Mascot (Matrix Science, London, United Kingdom), peptide selector settings employed the followin […]


Aberrant Activation of p38 MAP Kinase Dependent Innate Immune Responses Is Toxic to Caenorhabditis elegans

PMCID: 4777117
PMID: 26818074
DOI: 10.1534/g3.115.025650

[…] EMS mutagenesis was performed on strain agIs44 as described above. Synchronized F1 progeny from approximately 170,000 mutagenized haploid genomes were screened for animals that constitutively express agIs44 GFP (green fluorescent protein) f […]


De regulation of gene expression and alternative splicing affects distinct cellular pathways in the aging hippocampus

PMCID: 4230043
PMID: 25431548
DOI: 10.3389/fncel.2014.00373
call_split See protocol

[…] protocol (v2.1)—wash solution 3 was replaced by acetonitrile. After that, scanning was performed using an Agilent G2505B scanner. Data analysis was performed as described previously (Peleg et al., ; Agis-Balboa et al., ; Kerimoglu et al., ). In summary, data was analyzed using Agilent Feature Extraction software, version and the Limma (Smyth et al., ) package for R/Bioconductor (Gentleman […]


Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing

BMC Genomics
PMCID: 3224338
PMID: 21569327
DOI: 10.1186/1471-2164-12-227

[…] l Arabidopsis genes when further sampling from the defined read pool. An identical approach was also taken to approximate the transcript coverage with the difference that the number of all identified AGIs was not recorded but the number of AGIs that was identified at least by 5, 10 and 100 reads. […]


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AGIS institution(s)
Human Genome Laboratory, Department of Microbiology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore; Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore; Department of Physiology and Oncology Research Institute, Yong Loo Lin School of Medicine, National University of Singapore, Singapore

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