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AHD specifications

Information


Unique identifier OMICS_02668
Name AHD
Alternative name Arabidopsis Hormone Database
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Version 2.0
Maintained No

Taxon


  • Plants and Fungi
    • Arabidopsis thaliana

Maintainers


This tool is not available anymore.

Additional information


http://ahd.cbi.pku.edu.cn/

Publications for Arabidopsis Hormone Database

AHD citations

 (25)
library_books

Tcf12 Is Involved in Early Cell Fate Determination and Subset Specification of Midbrain Dopamine Neurons

2017
PMCID: 5671939
PMID: 29163030
DOI: 10.3389/fnmol.2017.00353

[…] in 5 (matching) coronal sections of E12.5 embryos (n = 3 Tcf12+/+;En1cre/+ n = 3 Tcf12lox/lox;En1cre/+). Cells were counted as positive, if staining co-localized with a nuclear DAPI staining.TH- and AHD2-expressing cells in the adult brain were quantified in 6–11 (matching) coronal sections of P30 adult brains (n = 3 Tcf12+/+;En1cre/+/Tcf12+/+;Pitx3cre/+ n = 3 Tcf12lox/lox;En1cre/+/Tcf12lox/lox;P […]

library_books

Transcript profiling of genes expressed during fibre development in diploid cotton (Gossypium arboreum L.)

2017
BMC Genomics
PMCID: 5580217
PMID: 28859611
DOI: 10.1186/s12864-017-4066-y

[…] transcription factors related to phytohormone biosynthesis and signal transduction pathways, against the Arabidopsis transcription factor database (http://plntfdb.bio.uni-potsdam.de, version 3.0) and Arabidopsis hormone database (http://ahd.cbi.pku.edu.cn, version 2.0) respectively, by BLASTX with E value cutoff ≤ e−10. Based on MIPS functional catalogue (https://www.helmholtz-muenchen.de/ibis/res […]

library_books

Phase plate cryo EM structure of a class B GPCR G protein complex

2017
Nature
PMCID: 5832441
PMID: 28437792
DOI: 10.1038/nature22327

[…] ted within an opening of the helical bundle and attributable to sCT is also resolved (). The ECD is less well resolved due to partial flexibility, while large variability in the Gαs α-helical domain (AHD) prevented reconstruction of this density (). The AHD domain is discernable in low resolution 3D maps, where it is observed to adopt variable conformations in respect to the Ras-like domain, consi […]

library_books

Identification and Characterization of a Novel Salt Tolerant Esterase from the Deep Sea Sediment of the South China Sea

2017
Front Microbiol
PMCID: 5362591
PMID: 28386249
DOI: 10.3389/fmicb.2017.00441

[…] entified, which is composed of Ser120, Asp247, and His275 (Figure ). The catalytic Ser120 is located in the conserved GASMGGMI motif, Asp247 in the conserved DPL motif, and His275 in the conserved MG/AHD motif. […]

library_books

Screening of Candidate Leaf Morphology Genes by Integration of QTL Mapping and RNA Sequencing Technologies in Oilseed Rape (Brassica napus L.)

2017
PLoS One
PMCID: 5222374
PMID: 28068426
DOI: 10.1371/journal.pone.0169641

[…] , DEGs were aligned to known TFs and plant hormone genes in the A. thaliana genome that were downloaded from The Plant Transcription Factor Database (http://planttfdb.cbi.pku.edu.cn/index.php) [] and Arabidopsis Hormone Database 2.0 (http://ahd.cbi.pku.edu.cn/) [], respectively. […]

library_books

Functional and RNA Sequencing Analysis Revealed Expression of a Novel Stay Green Gene from Zoysia japonica (ZjSGR) Caused Chlorophyll Degradation and Accelerated Senescence in Arabidopsis

2016
Front Plant Sci
PMCID: 5159421
PMID: 28018416
DOI: 10.3389/fpls.2016.01894

[…] mong which the plant hormone signal transduction pathway was significantly enriched (Corrected P < 0.05). To gain insight into the hormone-mediated regulation in senescence, we mapped the DEGs to the Arabidopsis Hormone Database. The results showed that 176 of the 595 DEGs were matched to the SA, ABA, Auxin, JA, and ET associated processes, including response, signaling, biosynthesis and metabolis […]

Citations

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AHD institution(s)
National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing, China; Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing, China; Beijing Genomics Institute at Shenzhen, Shenzhen, China
AHD funding source(s)
National Natural Science Foundation of China (30625003 and 30730011); Ministry of Science and Technology of China (2009CB119101); Ministry of Education of China (ED20060047).

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