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AIR specifications


Unique identifier OMICS_27477
Name AIR
Alternative name Automated Image registration
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Registration required Yes
Maintained Yes



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  • person_outline Roger Woods <>

Additional information

Publications for Automated Image registration

AIR in pipeline

PMCID: 2430534
PMID: 18596957
DOI: 10.1371/journal.pone.0002570

[…] the brain-extracted mri images in original space were then transformed to match this study-specific template using both linear 12-parameter affine, and 5th order non-linear transformation using automated image registration (air; . images in standard space were segmented into the probability of gray-matter, white-matter and csf using fsl-fast . in addition […]

AIR in publications

PMCID: 5456286
PMID: 28933409
DOI: 10.3390/diseases4030029

[…] of the signal:noise ratio and bias using similar imaging protocol has been published []., all dti data sets were processed offline using dtistudio software. using a 12-mode affine transformation of automated image registration, the raw diffusion-weighted images were coregistered to a b = 0 image []. the six independent elements of the diffusion tensor (dxx, dyy, dzz, dxy, dxz, dyz), including […]

PMCID: 4565718
PMID: 26003951
DOI: 10.1016/j.joca.2015.05.004

[…] approach has been validated for collagen distribution within normal and osteoarthritic ac histological slices., the micro-ct image stacks for the horse samples were aligned and re-sliced with the automated image registration software (version 5.3.0, university of california, berkeley, ca) using a linear rigid body model (6 degrees of freedom) []. one micro-ct image slice (8.7 μm thickness) […]

PMCID: 4756719
PMID: 25964505
DOI: 10.1093/ijnp/pyv052

[…] smoothed using a 7 point gaussian filter and converted to percent change based on the median of the run. data were coregistered to the colin-27 montreal neurological institute template using the automated image registration package’s (air () 32 parameter nonlinear automated warping algorithm and spatially smoothed using a 6-mm full-width at half maximum filter. finally, because even small […]

PMCID: 4474092
PMID: 26106573
DOI: 10.1016/j.nicl.2015.04.015

[…] involving both mr phantom and traveling human subject “phantom” were followed rigorously as reported elsewhere (; ; )., the dti data were corrected for head motion and eddy current artifact using automated image registration, an affine transformation method as described by . the b-matrix was rotated when correcting for subject motion (). to address the recent concerns in the literature […]

PMCID: 4014574
PMID: 24809486
DOI: 10.1371/journal.pone.0096985

[…] krieger institute, or . the raw diffusion-weighted images were first co-registered to one of the b0 images with a 12-parameter affine transformation using automated image registration (air) . the six elements of the diffusion tensor, the fractional anisotropy (fa), and the mean diffusivity (md) were calculated., for the sixteen subjects […]

AIR institution(s)
Department of Neurology, UCLA School of Medicine, Los Angeles, CA, USA
AIR funding source(s)
Supported by a grant from the Charles A. Dana Foundation, by National Institute of Neurological Disorders and Stroke grant 1 K08 NS-01646, by the Department of Energycontract DE-FCO3-87ER60615, and generous gifts from the Pierson-Lovelace Foundation, the Ahmanson Foundation, the Tamkin Foundation, the North Star Fund and the Brain Mapping Medical Research Organization.

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