Aivia statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Aivia
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Tool usage distribution map

This map represents all the scientific publications referring to Aivia per scientific context
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Popular tool citations

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Protocols

Aivia specifications

Information


Unique identifier OMICS_18211
Name Aivia
Alternative names SVCell, CL-Quant
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data Any microscopy image data.
Input format Any microscopy image data.
Output data Images, masks, reconstructions, spreadsheets, graphs, videos
Output format Images, masks, reconstructions, spreadsheets, graphs, videos
Operating system Windows
License Commercial
Computer skills Medium
Version 5.0.2
First release date 2017
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Luciano Lucas

Aivia citations

 (6)
library_books

The mechanical microenvironment regulates ovarian cancer cell morphology, migration, and spheroid disaggregation

2018
Sci Rep
PMCID: 5940803
PMID: 29740072
DOI: 10.1038/s41598-018-25589-0

[…] mpus), maintaining the cells at 37 °C in a 5% CO2 environment for the duration of the imaging. Phase contrast and fluorescent images were captured every 15 min for 14 h. The nuclei tracking recipe of SVCell/AIVIA (DRVision Technologies, Bellvue, WA) was used to track individual nuclei and obtain (x,y) coordinates to calculate displacement, path length, and cell speed. Migrating cells were identifi […]

call_split

EGFR Activation Leads to Cell Death Independent of PI3K/AKT/mTOR in an AD293 Cell Line

2016
PLoS One
PMCID: 4859505
PMID: 27153109
DOI: 10.1371/journal.pone.0155230
call_split See protocol

[…] and 5% CO2 and passaged with Trypsin/EDTA (0.05%; Life Technologies). Cells were observed with Biostation CT (Nikon, Japan) and cell counting was performed with ImageJ (http://imagej.nih.gov/ij/) and CL-Quant Ver3.10 imaging software (Nikon). […]

library_books

Evaluating Cell Processes, Quality, and Biomarkers in Pluripotent Stem Cells Using Video Bioinformatics

2016
PLoS One
PMCID: 4743914
PMID: 26848582
DOI: 10.1371/journal.pone.0148642

[…] on, shape, movement, and size []. We previously developed in-house video segmentation tools to analyze single hESC and small colonies [–]. In a toxicological application of video bioinformatics using CL-Quant software [], cigarette smoke treatment altered hESC colony growth (area) and health []. While the above studies looked at single endpoints, multiple features related to cellular processes and […]

library_books

KLF4 N Terminal Variance Modulates Induced Reprogramming to Pluripotency

2015
Stem Cell Reports
PMCID: 4400650
PMID: 25772473
DOI: 10.1016/j.stemcr.2015.02.004

[…] equipped with GFP and mCherry fluorescence filters and phase contrast using 2× lenses. The single-plane images of each channel were stitched automatically using the automated image analysis software CL-Quant 3.0 (Nikon). […]

library_books

Metal and Silicate Particles Including Nanoparticles Are Present in Electronic Cigarette Cartomizer Fluid and Aerosol

2013
PLoS One
PMCID: 3603976
PMID: 23526962
DOI: 10.1371/journal.pone.0057987

[…] was done by counting the percentage of attached cells in five images from the 8th hour of incubation by which time attachment was complete. Confluency was compared in control and treated groups with CL Quant software using five images from the 32 hour time point.To evaluate cytotoxicity with the MTT assay, 20,000 hPF/well were plated on poly-L-lysine coated 96-well plates (Fisher, Chino, CA). Aft […]

library_books

Protein Kinase C Regulates Human Pluripotent Stem Cell Self Renewal

2013
PLoS One
PMCID: 3549959
PMID: 23349801
DOI: 10.1371/journal.pone.0054122

[…] h FN, the cells were incubated in a live cell imaging system, BioStation CT (Nikon Instruments Inc., Tokyo, Japan) at 37°C 10% CO2. The images were captured every 12 hours and analyzed by a soft ware CL-Quant (Nikon Instruments Inc.). […]


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