Aivia statistics

info info

Citations per year


Popular tool citations

chevron_left Cell tracking Calcium imaging Cell tracking 3D image visualization High-throughput screening Cell phenotyping Neuron tracing Image-analysis libraries Cell tracking 3D image analysis Particle tracking Neuron tracing Neurite growth Scratch assay Image cytometry Colocalization analysis Cell phenotyping Cell counting 3D image visualization Neurite growth High-throughput screening Image cytometry Cell counting Neuron tracing Neurite growth Neuron tracing chevron_right

Tool usage distribution map

Tool usage distribution map
info info

Associated diseases

Associated diseases
Want to access the full stats & trends on this tool?

Aivia specifications


Unique identifier OMICS_18211
Name Aivia
Alternative names SVCell, CL-Quant
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data Any microscopy image data.
Input format Any microscopy image data.
Output data Images, masks, reconstructions, spreadsheets, graphs, videos
Output format Images, masks, reconstructions, spreadsheets, graphs, videos
Operating system Windows
License Commercial
Computer skills Medium
Version 5.0.2
First release date 2017
Stability Stable
Maintained Yes




No version available



  • person_outline Luciano Lucas <>

Aivia citations


The mechanical microenvironment regulates ovarian cancer cell morphology, migration, and spheroid disaggregation

PMCID: 5940803
PMID: 29740072
DOI: 10.1038/s41598-018-25589-0

[…] maintaining the cells at 37 °c in a 5% co2 environment for the duration of the imaging. phase contrast and fluorescent images were captured every 15 min for 14 h. the nuclei tracking recipe of svcell/aivia (drvision technologies, bellvue, wa) was used to track individual nuclei and obtain (x,y) coordinates to calculate displacement, path length, and cell speed. migrating cells […]


An open repository for single cell reconstructions of the brain forest

PMCID: 5827689
PMID: 29485626
DOI: 10.1038/sdata.2018.6

[…] in a past competition of the chinese applied math olympiads ( similarly, data from are used to train commercial expert systems ( and to produce multimedia art installations ( only a fraction of these outcomes could be predicted at the outset, reinforcing the notion that open data availability may […]


Direct cell–cell contact between mature osteoblasts and osteoclasts dynamically controls their functions in vivo

PMCID: 5775424
PMID: 29352112
DOI: 10.1038/s41467-017-02541-w

[…] risedronate (ea pharma co., ltd) in pbs was intravenously injected 1 day before imaging., assessment of the osteoclast motility was performed by using previously developed image analysis software cl-quant 2.30 (nikon) for tracking the morphological changes of osteoclasts. briefly, cell shapes were semi-automatically extracted by the software and the cell deformation index (cdi) was calculated […]


SOX10 Nano Lantern Reporter Human iPS Cells; A Versatile Tool for Neural Crest Research

PMCID: 5249153
PMID: 28107504
DOI: 10.1371/journal.pone.0170342

[…] images (magnification 10x, 5x5 tiles) were taken at 10 min intervals for 24 hours using biostation ct (nikon) at 37°c with 5% co2. cell migration rate was measured by tracking analysis using cl-quant software (nikon) for initial 12 hours with time-lapse images., total rnas from sorted or cultured cells were extracted using rneasy micro kit (qiagen) and genome dnas were extracted […]


Parametric analysis of colony morphology of non labelled live human pluripotent stem cells for cell quality control

PMCID: 5036041
PMID: 27667091
DOI: 10.1038/srep34009

[…] culture conditions were transferred to feeder-free culture conditions as described in the ., immunocytochemistry was performed as described previously. image analysis was performed using cl-quant (version 3.0 beta, nikon, tokyo, japan). primary and secondary antibodies used in the present study are listed in ., phase-contrast colony image acquisition was achieved using a biostation […]


EGFR Activation Leads to Cell Death Independent of PI3K/AKT/mTOR in an AD293 Cell Line

PMCID: 4859505
PMID: 27153109
DOI: 10.1371/journal.pone.0155230

[…] 5% co2 and passaged with trypsin/edta (0.05%; life technologies). cells were observed with biostation ct (nikon, japan) and cell counting was performed with imagej ( and cl-quant ver3.10 imaging software (nikon)., afatinib, erlotinib, gefitinib, gdc-0941, rapamycin and nu-7441 were purchased from selleck chemicals (usa). egf (invitrogen, usa) was used […]

Want to access the full list of citations?

Aivia reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Aivia