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Aivia specifications

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Unique identifier OMICS_18211
Name Aivia
Alternative names SVCell, CL-Quant
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data Any microscopy image data.
Input format Any microscopy image data.
Output data Images, masks, reconstructions, spreadsheets, graphs, videos
Output format Images, masks, reconstructions, spreadsheets, graphs, videos
Operating system Windows
License Commercial
Computer skills Medium
Version 5.0.2
First release date 2017
Stability Stable
Maintained Yes

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  • person_outline Luciano Lucas <>

Aivia citations

 (16)
library_books

The mechanical microenvironment regulates ovarian cancer cell morphology, migration, and spheroid disaggregation

2018
PMCID: 5940803
PMID: 29740072
DOI: 10.1038/s41598-018-25589-0

[…] maintaining the cells at 37 °c in a 5% co2 environment for the duration of the imaging. phase contrast and fluorescent images were captured every 15 min for 14 h. the nuclei tracking recipe of svcell/aivia (drvision technologies, bellvue, wa) was used to track individual nuclei and obtain (x,y) coordinates to calculate displacement, path length, and cell speed. migrating cells […]

library_books

An open repository for single cell reconstructions of the brain forest

2018
PMCID: 5827689
PMID: 29485626
DOI: 10.1038/sdata.2018.6

[…] in a past competition of the chinese applied math olympiads (neuromorpho.org/china_contest.jsp). similarly, data from neuromorpho.org are used to train commercial expert systems (drvtechnologies.com/aivia5) and to produce multimedia art installations (vimeo.com/191338612). only a fraction of these outcomes could be predicted at the outset, reinforcing the notion that open data availability may […]

library_books

Direct cell–cell contact between mature osteoblasts and osteoclasts dynamically controls their functions in vivo

2018
PMCID: 5775424
PMID: 29352112
DOI: 10.1038/s41467-017-02541-w

[…] risedronate (ea pharma co., ltd) in pbs was intravenously injected 1 day before imaging., assessment of the osteoclast motility was performed by using previously developed image analysis software cl-quant 2.30 (nikon) for tracking the morphological changes of osteoclasts. briefly, cell shapes were semi-automatically extracted by the software and the cell deformation index (cdi) was calculated […]

library_books

SOX10 Nano Lantern Reporter Human iPS Cells; A Versatile Tool for Neural Crest Research

2017
PMCID: 5249153
PMID: 28107504
DOI: 10.1371/journal.pone.0170342

[…] images (magnification 10x, 5x5 tiles) were taken at 10 min intervals for 24 hours using biostation ct (nikon) at 37°c with 5% co2. cell migration rate was measured by tracking analysis using cl-quant software (nikon) for initial 12 hours with time-lapse images., total rnas from sorted or cultured cells were extracted using rneasy micro kit (qiagen) and genome dnas were extracted […]

library_books

Parametric analysis of colony morphology of non labelled live human pluripotent stem cells for cell quality control

2016
PMCID: 5036041
PMID: 27667091
DOI: 10.1038/srep34009

[…] culture conditions were transferred to feeder-free culture conditions as described in the ., immunocytochemistry was performed as described previously. image analysis was performed using cl-quant (version 3.0 beta, nikon, tokyo, japan). primary and secondary antibodies used in the present study are listed in ., phase-contrast colony image acquisition was achieved using a biostation […]

library_books

EGFR Activation Leads to Cell Death Independent of PI3K/AKT/mTOR in an AD293 Cell Line

2016
PMCID: 4859505
PMID: 27153109
DOI: 10.1371/journal.pone.0155230

[…] 5% co2 and passaged with trypsin/edta (0.05%; life technologies). cells were observed with biostation ct (nikon, japan) and cell counting was performed with imagej (http://imagej.nih.gov/ij/) and cl-quant ver3.10 imaging software (nikon)., afatinib, erlotinib, gefitinib, gdc-0941, rapamycin and nu-7441 were purchased from selleck chemicals (usa). egf (invitrogen, usa) was used […]


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