AL2CO pipeline

AL2CO specifications

Information


Unique identifier OMICS_15454
Name AL2CO
Interface Web user interface
Restrictions to use None
Input data A protein sequence alignment.
Input format CLUSTAL
Programming languages C
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Nick Grishin <>

Publication for AL2CO

AL2CO IN pipeline

2016
PMCID: 5130295
DOI: 10.7554/eLife.21516.034

[…] 2.2.26, e-values¬†<¬†1e-180) (altschul et al., 1997) and then 20 fungal sequences representing a wide taxonomic range were selected. sequence conservation values were calculated with the program al2co, using no weighting scheme for amino acid frequency estimation, the sum-of-pairs measure conservation calculation method, and the blosum62 scoring matrix (pei and grishin, 2001)., to model […]

AL2CO institution(s)
Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, USA

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