Alamut Batch pipeline

Alamut Batch specifications

Information


Unique identifier OMICS_05999
Name Alamut Batch
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux
License Commercial
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Animals
    • Homo sapiens

Versioning


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Alamut Batch citations

 (3)
2016
PMCID: 4947861

[…] were accepted if they had a minimum coverage of 25 and heterozygote variants calls were accepted if the read frequency of the minor variant was >0.15. accepted variants were analyzed using alamut batch (interactive biosoftware, rouen, france)., eight variants, rs1800414:a>g (p.his615arg), rs121918166:g>a (p.val443ile), rs74653330:a>t (p.ala481thr), rs1800407:g>a […]

2016
PMCID: 4777533

[…] of 50. variants, where two different alleles were observed, were accepted as heterozygote variant calls if the frequency of the minor variant allele was >0.15. variants were analysed using alamut batch (interactive biosoftware, france). mc1r variants were grouped according to potential significance. all missense, non-sense, and frameshift mutations (s2 table) were assigned to the mc1r […]

2015
PMCID: 4712775

[…] with somatic low stringency mutation workflow and default settings. bam files of raw reads were reviewed using integrative genomics viewer v2.3 37, 38., dicer1 sequence variants were annotated with alamut batch software (interactive biosoftware, rouen, france), with reference to dicer1 transcript record nm_177438.2. nonsense, frameshift and canonical splice-site mutations were considered loss […]

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