albacore statistics

info info

Citations per year

info

Tool usage distribution map

info info

Associated diseases

info

Popular tool citations

chevron_left Base calling chevron_right
Want to access the full stats & trends on this tool?

albacore specifications

Information


Unique identifier OMICS_20597
Name albacore
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Biological technology Oxford Nanopore
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

Download


download.png
docker.png

Versioning


No version available

Documentation


Additional information


Albacore C++ version is also available through the ONT Developer Channel to users who have signed the Developer terms and conditions.

albacore citation

library_books

Real time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building

2018
GigaScience
PMCID: 5905381
PMID: 29617771
DOI: 10.1093/gigascience/giy033

[…] The commands used can be found in the and Methods section.To retrieve the nucleotide sequences from raw signal data generated by the MinKNOW software, we used Albacore 1.2.5 [] for base calling and demultiplexing of the ONT barcodes (Albacore, RRID:SCR_015897). The FAST5 files were then converted to fastq files using Nanopolish [, ]. We then filtered the ra […]


Want to access the full list of citations?

albacore reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review albacore