ALDEx specifications

Information


Unique identifier OMICS_01297
Name ALDEx
Alternative name ANOVA-Like Differential Expression
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A table containing per-gene sequencing counts for each replicate and a list indicating which replicate should be grouped in what condition.
Output data It computes one table for all genes containing the following: individual median expression data for each gene in each sample, the median expression for each gene in each condition, the median expression level across conditions (A), the median absolute fold difference, the median effect-size, the median within condition difference and the quantile of zero.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes

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Documentation


Maintainers


  • person_outline Gregory B. Gloor <>
  • person_outline Thomas Quinn <>

Additional information


https://bioconductor.org/packages/release/bioc/html/ALDEx2.html

ALDEx articles

ALDEx institution(s)
YouKaryote Genomics, London, ON, Canada; Department of Biochemistry, The University of Western Ontario, London, ON, Canada; Department of Microbiology & Immunology, The University of Western Ontario, London, ON, Canada; Department of Surgery, The University of Western Ontario, London, ON, Canada; Canadian Research & Development Centre for Probiotics, Lawson Health Research Institute, London, ON, Canada
ALDEx funding source(s)
This work was supported by NSERC, CIHR and an Ontario Graduate Scholarship.

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