ALFRED-G statistics

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ALFRED-G specifications

Information


Unique identifier OMICS_19116
Name ALFRED-G
Alternative name ALFRED
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A set of n sequences.
Input format FASTA
Output data An n x n matrix of distance estimate for use in Phylogenetic inference.
Operating system Unix/Linux, Mac OS
Programming languages C++, Perl
Computer skills Advanced
Stability Stable
Requirements
A modern C++ ready compiler, cmake, Git
Maintained Yes

Versioning


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Maintainer


  • person_outline Srinivas Aluru <>

Publications for ALFRED-G

ALFRED-G in publications

 (8)
PMCID: 4918981
PMID: 27336403
DOI: 10.1371/journal.pcbi.1004985

[…] k-mismatch acs (kmacs) [] is an extension of the acs approach which approximates the number of substring matches with up to k mismatches. another, more recent extension of the acs approach is alfred-g, also capable of computing lengths of shared sequences with mismatches allowed []. acs-like methods which allow for k>1 mismatches can be highly costly in computational terms, […]

PMCID: 4697290
PMID: 26690792
DOI: 10.1017/S1466252315000201

[…] directors (1992 – present), during the history of the conference from 1920 to 2014. seven of them served before 1950. from 1950 to 2014, crwad has been served by only four dedicated individuals, drs alfred g. karlson, alvin f. weber, erwin m. kohler, and robert p. ellis. dr david benfield was approved by the council as the 13th executive director at the 2014 annual meeting and began his term […]

PMCID: 4422518
PMID: 25946093
DOI: 10.1371/journal.pone.0124017

[…] switzerland). 1x dulbecco’s phosphate buffered saline without ca2+ and mg2+ was purchased from paa laboratories (pasching, austria). baculovirus encoding bovine ac1 was kindly provided by prof. alfred g. gilman (university of texas, dallas, tx, usa) []. [α-32p]atp (3,000 ci/mmol) was purchased from hartmann (braunschweig, germany). aluminium oxide, mp alumina n super i, was obtained from mp […]

PMCID: 4381316
PMID: 25838739
DOI: 10.4103/0973-1229.153339

[…] what this means is that the best of teaching or the best review article with the greatest of citations, cannot get you the prize. but an original finding like g protein can (given in 1994 to alfred g. gilman and martin rodbell. please do not connect it to discovery of the ‘g’ spot. although that reward, according to some, may be more worthy than the nobel!)., talking of clinical trials, […]

PMCID: 3877993
PMID: 24386514
DOI: 10.5487/TR.2013.29.3.149

[…] this review discusses the structural aspects of gpcr-g protein coupling by comparing the results of previous biochemical and biophysical studies to the gpcr-g protein crystal structure., in 1994, alfred g. gilman and martin rodbell were awarded the nobel prize in physiology or medicine for “their discovery of g-proteins and the role of these proteins in signal transduction in cells.” eighteen […]


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ALFRED-G institution(s)
Department of Computer Science, University of Central Florida, Orlando FL, USA; Institute for Data Engineering and Science, Georgia Institute of Technology, Atlanta, GA, USA; School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, GA, USA; School of Electrical Engineering and Computer Science, Louisiana State University, Baton Rouge, LA, USA
ALFRED-G funding source(s)
Supported by the U.S. National Science Foundation grant IIS-1416259 and the U.S. National Science Foundation grant IIS-1416259.

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