AlgPred protocols

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AlgPred specifications

Information


Unique identifier OMICS_06624
Name AlgPred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Publication for AlgPred

AlgPred in pipeline

2017
PMCID: 5569093
PMID: 28835708
DOI: 10.1038/s41598-017-09199-w

[…] having both negative and positive prediction scores out of which 58 ifn-γ inducing epitopes (supplementary table ) carrying prediction score greater than 1 were selected (fig. ).figure 2 , the algpred server was used to predict the non-allergic behavior of final vaccine construct. prediction is based on svm approach; it uses the amino acid sequence for prediction. prediction result gives […]


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AlgPred in publications

 (16)
PMCID: 5954444
PMID: 29780242
DOI: 10.1177/1177932218755337

[…] the epitopes were predicted in different major histocompatibility complex (mhc) class ii alleles (iab, iad, ias, ied, and ies)., to analyze allergenic of the selected targets, software algpred (http://www.imtech.res.in/raghava/algpred/index.html) was used. the server executes prediction based on 6 different approaches. combinations of the 6 approaches can be used to predict […]

PMCID: 5929558
PMID: 29715318
DOI: 10.1371/journal.pone.0196484

[…] was used for the prediction of mhc-i binding and proteasome c-terminal cleavage., in order to validate the non-allergenic potential of the predicted b-cell and t-cell epitopes an online web tool algpred [] (http://crdd.osdd.net/raghava/algpred/) was utilized by using multiple algorithms (svmc, igeepitope, arps blast and mast) to predict the allergenic peptides with an accuracy of 85% […]

PMCID: 5857718
PMID: 29560474
DOI: 10.1016/j.heliyon.2018.e00564

[…] which was further refined via yasara force field and molecular repairing using a foldx method. immunogenicity was examined with epitopia software, whereas allergen properties were tested using algpred. the pattern of the tandem epitope binding with anti-gp350/220 antibodies was performed using z-dock and snugdock. the tandem epitope was then overproduced in e. coli strain bl21 as a host […]

PMCID: 5840964
PMID: 29531919
DOI: 10.4103/abr.abr_10_17

[…] of discontinuous b-cell epitopes from 3d protein structure was performed using ellipro antibody epitope prediction tool.[], prediction of allergenicity of the fusion protein has been done using algpred tool.[], b. abortus 544 chromosomal dna was extracted using dna extraction kit (roche, germany) according to the manufacturer recommendation. the coding sequences of somp2b (kp071938) […]

PMCID: 5796087
PMID: 29300301
DOI: 10.3390/ijms19010138

[…] enzymatic hydrolysates of fractions p1–p3 were analyzed; 387 different peptides were identified by uplc-q-tof., the potential toxicity and allergic of all peptides was assessed using toxinpred and algpred. all peptides show no evidence of toxicity and allergic in silico (, –cdocker energy > 150). the numbers of unique peptides identified in the e1, e2 and e3 fractions were 96,187 and 247, […]


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AlgPred institution(s)
Bioinformatics Centre, Institute of Microbial Technology, Chandigarh, India

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