Aligners for Sanger sequencing analysis.
Desktop app
G T A T C G C T A Sequence Search and… Sequence Search and Alignment by Hashing Algorithm

SSAHA Sequence Search and Alignment by Hashing Algorithm

A pairwise sequence alignment program designed for the efficient mapping of…

A pairwise sequence alignment program designed for the efficient mapping of sequencing reads onto genomic reference sequences. SSAHA reads of most sequencing platforms (ABI-Sanger, Roche 454,…

Desktop app
G T A T C G C T A Mimicking Intelligent… Mimicking Intelligent Read Assembly

MIRA Mimicking Intelligent Read Assembly

Sequence assembler and mapper for whole genome shotgun and EST/RNASeq…

Sequence assembler and mapper for whole genome shotgun and EST/RNASeq sequencing data.

Desktop app
G T A T C G C T A Consed Consed

Consed

A program for viewing and editing assemblies prepared by the Phrap assembly…

A program for viewing and editing assemblies prepared by the Phrap assembly program. To allow full-feature editing of large datasets while keeping memory requirements low, we developed a viewer,…

Desktop app
Pine Alignment and… Pine Alignment and SNP Identification Pipeline

PineSAP Pine Alignment and SNP Identification Pipeline

Provides a high-throughput solution to single nucleotide polymorphism (SNP)…

Provides a high-throughput solution to single nucleotide polymorphism (SNP) prediction using multiple sequence alignments from re-sequencing data. This pipeline integrates a hybrid of customized…

Desktop app
G T A T C G C T A SMALT SMALT

SMALT

Efficiently aligns DNA sequencing reads with a reference genome. SMALT employs…

Efficiently aligns DNA sequencing reads with a reference genome. SMALT employs a hash index of short words (< 21 nucleotides long), sampled at equidistant steps along the genomic reference…

Advertisements
Join Omic Community

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.