Alignment-Annotator

[…] 57–589) based on the recent crystal structure of the drosophila melanogaster dopamine transporter (ddat) bound to dopamine (pdb id: 4xp1) []. an adaptation of this sequence alignment, created by the alignment-annotator web server [], is provided in —in the for convenience. the newly crystallized ddat structure is well suited as a template for homology modeling of rdat because the overall […]

[…] (22 independent clones), were isolated., the amino acid sequences of 53 nf-yb and 32 nf-yc proteins were aligned with clustal omega () and alignments were further inspected by promals3d () and the alignment annotator (). unrooted phylogenetic trees, based on crude distance measures, were visualized in treeview (). genbank accession numbers of protein sequences included in the phylogenetic […]

[…] , for the purposes of bioasq task 1a, three baselines were utilized, namely the bioasq_baseline, the mti, and its special design, the mtifl. the first baseline, the bioasq_baseline, is the attribute alignment annotator developed by doms []. it is an unsupervised method, based on the smith-waterman sequence alignment algorithm [] and can recognize terms from mesh and gene ontology in a given text […]