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AlignWise specifications

Information


Unique identifier OMICS_10602
Name AlignWise
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License BSD 2-clause “Simplified” License
Computer skills Advanced
Stability Stable
Requirements
BioPerl, BLAST+, MUSCLE
Maintained Yes

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Maintainer


  • person_outline Matthew Loose <>

Publication for AlignWise

AlignWise in publication

PMCID: 5561619
PMID: 28818101
DOI: 10.1186/s12936-017-1976-8

[…] position n386 to d1025)., for the genetic diversity analysis, sequences corresponding to the coding regions were extracted from the full-length amplicon. likely frameshift errors were corrected with alignwise []. sequences were then aligned with mafft with the l-insi option. dnasp v5 [] was used to compute population genetic parameters, including nucleotide diversity, which is the average number […]


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AlignWise institution(s)
School of Life Sciences, University of Nottingham, Nottingham, UK
AlignWise funding source(s)
This work was funded through a BBSRC and University of Nottingham joint PhD studentship.

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