AlignWise specifications

Information


Unique identifier OMICS_10602
Name AlignWise
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License BSD 2-clause “Simplified” License
Computer skills Advanced
Stability Stable
Requirements
BioPerl, BLAST+, MUSCLE
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Matthew Loose

Publication for AlignWise

AlignWise citation

library_books

A new method for sequencing the hypervariable Plasmodium falciparum gene var2csa from clinical samples

2017
Malar J
PMCID: 5561619
PMID: 28818101
DOI: 10.1186/s12936-017-1976-8

[…] id position N386 to D1025).For the genetic diversity analysis, sequences corresponding to the coding regions were extracted from the full-length amplicon. Likely frameshift errors were corrected with AlignWise []. Sequences were then aligned with MAFFT with the L-iNSi option. DnaSP v5 [] was used to compute population genetic parameters, including nucleotide diversity, which is the average number […]

AlignWise institution(s)
School of Life Sciences, University of Nottingham, Nottingham, UK
AlignWise funding source(s)
This work was funded through a BBSRC and University of Nottingham joint PhD studentship.

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